miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33305 5' -56.6 NC_007605.1 + 7226 0.66 0.90908
Target:  5'- gGUuUCCUGGACaCCCA--GUCUUAGu -3'
miRNA:   3'- gCGuAGGACCUG-GGGUacCAGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 12027 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 12807 0.71 0.630018
Target:  5'- -cCGUCC-GGGCCCgGagGGUCUCAGAg -3'
miRNA:   3'- gcGUAGGaCCUGGGgUa-CCAGAGUCU- -5'
33305 5' -56.6 NC_007605.1 + 13128 0.67 0.84538
Target:  5'- uGgGgCCUGGGCCCCGagGGUggcucccCUCAGAc -3'
miRNA:   3'- gCgUaGGACCUGGGGUa-CCA-------GAGUCU- -5'
33305 5' -56.6 NC_007605.1 + 13379 0.67 0.846173
Target:  5'- gGgAUCC-GGGCCaCUcgGGUCUCGGu -3'
miRNA:   3'- gCgUAGGaCCUGG-GGuaCCAGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 15096 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 15876 0.71 0.630018
Target:  5'- -cCGUCC-GGGCCCgGagGGUCUCAGAg -3'
miRNA:   3'- gcGUAGGaCCUGGGgUa-CCAGAGUCU- -5'
33305 5' -56.6 NC_007605.1 + 16196 0.67 0.84538
Target:  5'- uGgGgCCUGGGCCCCGagGGUggcucccCUCAGAc -3'
miRNA:   3'- gCgUaGGACCUGGGGUa-CCA-------GAGUCU- -5'
33305 5' -56.6 NC_007605.1 + 16448 0.67 0.846173
Target:  5'- gGgAUCC-GGGCCaCUcgGGUCUCGGu -3'
miRNA:   3'- gCgUAGGaCCUGG-GGuaCCAGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 18165 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 18945 0.71 0.630018
Target:  5'- -cCGUCC-GGGCCCgGagGGUCUCAGAg -3'
miRNA:   3'- gcGUAGGaCCUGGGgUa-CCAGAGUCU- -5'
33305 5' -56.6 NC_007605.1 + 19265 0.67 0.84538
Target:  5'- uGgGgCCUGGGCCCCGagGGUggcucccCUCAGAc -3'
miRNA:   3'- gCgUaGGACCUGGGGUa-CCA-------GAGUCU- -5'
33305 5' -56.6 NC_007605.1 + 19517 0.67 0.846173
Target:  5'- gGgAUCC-GGGCCaCUcgGGUCUCGGu -3'
miRNA:   3'- gCgUAGGaCCUGG-GGuaCCAGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 21234 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 22014 0.71 0.630018
Target:  5'- -cCGUCC-GGGCCCgGagGGUCUCAGAg -3'
miRNA:   3'- gcGUAGGaCCUGGGgUa-CCAGAGUCU- -5'
33305 5' -56.6 NC_007605.1 + 22334 0.67 0.84538
Target:  5'- uGgGgCCUGGGCCCCGagGGUggcucccCUCAGAc -3'
miRNA:   3'- gCgUaGGACCUGGGGUa-CCA-------GAGUCU- -5'
33305 5' -56.6 NC_007605.1 + 22586 0.67 0.846173
Target:  5'- gGgAUCC-GGGCCaCUcgGGUCUCGGu -3'
miRNA:   3'- gCgUAGGaCCUGG-GGuaCCAGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 24303 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 25083 0.71 0.630018
Target:  5'- -cCGUCC-GGGCCCgGagGGUCUCAGAg -3'
miRNA:   3'- gcGUAGGaCCUGGGgUa-CCAGAGUCU- -5'
33305 5' -56.6 NC_007605.1 + 25403 0.67 0.84538
Target:  5'- uGgGgCCUGGGCCCCGagGGUggcucccCUCAGAc -3'
miRNA:   3'- gCgUaGGACCUGGGGUa-CCA-------GAGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.