miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 171304 0.66 0.864639
Target:  5'- -gCugGGgGGCCgCGGgggaaGGCCACGCCc -3'
miRNA:   3'- ugGugCUgUUGGgGCU-----UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 2935 0.66 0.864639
Target:  5'- aGCCAuggagcggacUGACGGCCCCuccguGCCccuACGCCGa -3'
miRNA:   3'- -UGGU----------GCUGUUGGGGcuu--CGG---UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 169707 0.66 0.864639
Target:  5'- -gCugGGgGGCCgCGGgggaaGGCCACGCCc -3'
miRNA:   3'- ugGugCUgUUGGgGCU-----UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 170244 0.66 0.864639
Target:  5'- -gCugGGgGGCCgCGGgggaaGGCCACGCCc -3'
miRNA:   3'- ugGugCUgUUGGgGCU-----UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 49660 0.66 0.864639
Target:  5'- cCCACGACAccGCCCCacgcGGGgCACGUa- -3'
miRNA:   3'- uGGUGCUGU--UGGGGc---UUCgGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 136203 0.66 0.864639
Target:  5'- gGCCAgCGAC-GCCCCGGAcCUACaaaaGCCGg -3'
miRNA:   3'- -UGGU-GCUGuUGGGGCUUcGGUG----CGGU- -5'
33306 3' -58.1 NC_007605.1 + 154631 0.66 0.864639
Target:  5'- gACCGgGACGGCUaCCagGggGCCAcCGUCAu -3'
miRNA:   3'- -UGGUgCUGUUGG-GG--CuuCGGU-GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 170767 0.66 0.864639
Target:  5'- -gCugGGgGGCCgCGGgggaaGGCCACGCCc -3'
miRNA:   3'- ugGugCUgUUGGgGCU-----UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 160650 0.66 0.864639
Target:  5'- aGCCACGuccaGACUCCGggGguCCA-GCCGg -3'
miRNA:   3'- -UGGUGCug--UUGGGGCuuC--GGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 65515 0.66 0.863901
Target:  5'- uCCAUGG--GCCUCGGggugcagGGCCugGCCGa -3'
miRNA:   3'- uGGUGCUguUGGGGCU-------UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 10667 0.66 0.860179
Target:  5'- gACCACGGuCcACCCCGcccucaagcguccggGAGCCGgGCg- -3'
miRNA:   3'- -UGGUGCU-GuUGGGGC---------------UUCGGUgCGgu -5'
33306 3' -58.1 NC_007605.1 + 40256 0.66 0.857166
Target:  5'- aGCCGCGGCccagcgcGCCCCGuucacgggggAGGaCCGCgGCCGa -3'
miRNA:   3'- -UGGUGCUGu------UGGGGC----------UUC-GGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 143247 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142840 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 143145 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142941 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 153211 0.66 0.857166
Target:  5'- gGCCACGGgAACgCCGu-GCCGCucggcguagGCCGg -3'
miRNA:   3'- -UGGUGCUgUUGgGGCuuCGGUG---------CGGU- -5'
33306 3' -58.1 NC_007605.1 + 143043 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142534 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142228 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.