miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 40256 0.66 0.857166
Target:  5'- aGCCGCGGCccagcgcGCCCCGuucacgggggAGGaCCGCgGCCGa -3'
miRNA:   3'- -UGGUGCUGu------UGGGGC----------UUC-GGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 160858 0.66 0.833602
Target:  5'- gGCCuGCGACGcgguGCUgaCCGGcucGGCCACGCUg -3'
miRNA:   3'- -UGG-UGCUGU----UGG--GGCU---UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 113221 0.66 0.840846
Target:  5'- cGCCACGGCAagACCUgGAuagucguGGCCAUcaucaGCCu -3'
miRNA:   3'- -UGGUGCUGU--UGGGgCU-------UCGGUG-----CGGu -5'
33306 3' -58.1 NC_007605.1 + 119292 0.66 0.841641
Target:  5'- aAUCACGcCccuuACCCCGAAGCaccUugGCCc -3'
miRNA:   3'- -UGGUGCuGu---UGGGGCUUCG---GugCGGu -5'
33306 3' -58.1 NC_007605.1 + 153211 0.66 0.857166
Target:  5'- gGCCACGGgAACgCCGu-GCCGCucggcguagGCCGg -3'
miRNA:   3'- -UGGUGCUgUUGgGGCuuCGGUG---------CGGU- -5'
33306 3' -58.1 NC_007605.1 + 10667 0.66 0.860179
Target:  5'- gACCACGGuCcACCCCGcccucaagcguccggGAGCCGgGCg- -3'
miRNA:   3'- -UGGUGCU-GuUGGGGC---------------UUCGGUgCGgu -5'
33306 3' -58.1 NC_007605.1 + 84485 0.66 0.849499
Target:  5'- aGCCAUGGCAACCUUu--GCCugGgCCc -3'
miRNA:   3'- -UGGUGCUGUUGGGGcuuCGGugC-GGu -5'
33306 3' -58.1 NC_007605.1 + 2935 0.66 0.864639
Target:  5'- aGCCAuggagcggacUGACGGCCCCuccguGCCccuACGCCGa -3'
miRNA:   3'- -UGGU----------GCUGUUGGGGcuu--CGG---UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 46668 0.66 0.825387
Target:  5'- uCCAgGGgcagcuccCAACCCCucugcaccguGAAGCUGCGCCAc -3'
miRNA:   3'- uGGUgCU--------GUUGGGG----------CUUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 123359 0.66 0.849499
Target:  5'- aGCCgguGC-ACAGCCCUGu-GCCugGCCc -3'
miRNA:   3'- -UGG---UGcUGUUGGGGCuuCGGugCGGu -5'
33306 3' -58.1 NC_007605.1 + 40023 0.66 0.841641
Target:  5'- cCCAgGGCGuGCCCCGcuuGCCugGUCc -3'
miRNA:   3'- uGGUgCUGU-UGGGGCuu-CGGugCGGu -5'
33306 3' -58.1 NC_007605.1 + 87815 0.66 0.841641
Target:  5'- uGCCGCGGgGcuccuGCCgCGggGCCuccUGCCGc -3'
miRNA:   3'- -UGGUGCUgU-----UGGgGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 154631 0.66 0.864639
Target:  5'- gACCGgGACGGCUaCCagGggGCCAcCGUCAu -3'
miRNA:   3'- -UGGUgCUGUUGG-GG--CuuCGGU-GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 81350 0.66 0.856408
Target:  5'- -aCACGGCAugGCCCCGuguccgguagcacAGGCCccaccuACGCCc -3'
miRNA:   3'- ugGUGCUGU--UGGGGC-------------UUCGG------UGCGGu -5'
33306 3' -58.1 NC_007605.1 + 103066 0.66 0.852589
Target:  5'- aGCgGCGuCAGcCCCCgccgcaguugcggcaGAAGCCGCGUCu -3'
miRNA:   3'- -UGgUGCuGUU-GGGG---------------CUUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 65515 0.66 0.863901
Target:  5'- uCCAUGG--GCCUCGGggugcagGGCCugGCCGa -3'
miRNA:   3'- uGGUGCUguUGGGGCU-------UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 136203 0.66 0.864639
Target:  5'- gGCCAgCGAC-GCCCCGGAcCUACaaaaGCCGg -3'
miRNA:   3'- -UGGU-GCUGuUGGGGCUUcGGUG----CGGU- -5'
33306 3' -58.1 NC_007605.1 + 49660 0.66 0.864639
Target:  5'- cCCACGACAccGCCCCacgcGGGgCACGUa- -3'
miRNA:   3'- uGGUGCUGU--UGGGGc---UUCgGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 73398 0.66 0.824556
Target:  5'- aGCgCGCGAgcuccacCAGCUCCcGGGCCACGuCCAc -3'
miRNA:   3'- -UG-GUGCU-------GUUGGGGcUUCGGUGC-GGU- -5'
33306 3' -58.1 NC_007605.1 + 84419 0.66 0.841641
Target:  5'- uCCAgCGACcACCCaCGcagcaaGAGCCugGCCc -3'
miRNA:   3'- uGGU-GCUGuUGGG-GC------UUCGGugCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.