miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 170295 0.66 0.841641
Target:  5'- gACCcCGACc-CCCCGccGCC-CGCCc -3'
miRNA:   3'- -UGGuGCUGuuGGGGCuuCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 136141 0.66 0.833602
Target:  5'- uACCguaGACuGCCgUGguGCCGCGCCGa -3'
miRNA:   3'- -UGGug-CUGuUGGgGCuuCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 162536 0.66 0.844807
Target:  5'- uACCACGugaugcaguacucguGCAACCCCuuugcgcAGCC-CGCCu -3'
miRNA:   3'- -UGGUGC---------------UGUUGGGGcu-----UCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 169758 0.66 0.841641
Target:  5'- gACCcCGACc-CCCCGccGCC-CGCCc -3'
miRNA:   3'- -UGGuGCUGuuGGGGCuuCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 51147 0.66 0.833602
Target:  5'- cACCAuCGACuGCCUCGggGUCACa--- -3'
miRNA:   3'- -UGGU-GCUGuUGGGGCuuCGGUGcggu -5'
33306 3' -58.1 NC_007605.1 + 160858 0.66 0.833602
Target:  5'- gGCCuGCGACGcgguGCUgaCCGGcucGGCCACGCUg -3'
miRNA:   3'- -UGG-UGCUGU----UGG--GGCU---UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 103733 0.66 0.825387
Target:  5'- uGCCAUGAUcuCCCCc-GGUCGCGCUc -3'
miRNA:   3'- -UGGUGCUGuuGGGGcuUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 81350 0.66 0.856408
Target:  5'- -aCACGGCAugGCCCCGuguccgguagcacAGGCCccaccuACGCCc -3'
miRNA:   3'- ugGUGCUGU--UGGGGC-------------UUCGG------UGCGGu -5'
33306 3' -58.1 NC_007605.1 + 84419 0.66 0.841641
Target:  5'- uCCAgCGACcACCCaCGcagcaaGAGCCugGCCc -3'
miRNA:   3'- uGGU-GCUGuUGGG-GC------UUCGGugCGGu -5'
33306 3' -58.1 NC_007605.1 + 40256 0.66 0.857166
Target:  5'- aGCCGCGGCccagcgcGCCCCGuucacgggggAGGaCCGCgGCCGa -3'
miRNA:   3'- -UGGUGCUGu------UGGGGC----------UUC-GGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 2501 0.66 0.825387
Target:  5'- gGCCACcaGAagGGCCCUcugGAAGCC-CGCCGc -3'
miRNA:   3'- -UGGUG--CUg-UUGGGG---CUUCGGuGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 46668 0.66 0.825387
Target:  5'- uCCAgGGgcagcuccCAACCCCucugcaccguGAAGCUGCGCCAc -3'
miRNA:   3'- uGGUgCU--------GUUGGGG----------CUUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 162251 0.66 0.849499
Target:  5'- gACCugGACGcgGCCCUGcaGGGCCGgGUg- -3'
miRNA:   3'- -UGGugCUGU--UGGGGC--UUCGGUgCGgu -5'
33306 3' -58.1 NC_007605.1 + 87815 0.66 0.841641
Target:  5'- uGCCGCGGgGcuccuGCCgCGggGCCuccUGCCGc -3'
miRNA:   3'- -UGGUGCUgU-----UGGgGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 63790 0.66 0.825387
Target:  5'- cGCCAccccCGGC-GCCgCCGGagAGCCACGCg- -3'
miRNA:   3'- -UGGU----GCUGuUGG-GGCU--UCGGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 171355 0.66 0.841641
Target:  5'- gACCcCGACc-CCCCGccGCC-CGCCc -3'
miRNA:   3'- -UGGuGCUGuuGGGGCuuCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 159921 0.66 0.841641
Target:  5'- cGCCGUGGC--UCCCGggGCCACGg-- -3'
miRNA:   3'- -UGGUGCUGuuGGGGCuuCGGUGCggu -5'
33306 3' -58.1 NC_007605.1 + 73398 0.66 0.824556
Target:  5'- aGCgCGCGAgcuccacCAGCUCCcGGGCCACGuCCAc -3'
miRNA:   3'- -UG-GUGCU-------GUUGGGGcUUCGGUGC-GGU- -5'
33306 3' -58.1 NC_007605.1 + 40023 0.66 0.841641
Target:  5'- cCCAgGGCGuGCCCCGcuuGCCugGUCc -3'
miRNA:   3'- uGGUgCUGU-UGGGGCuu-CGGugCGGu -5'
33306 3' -58.1 NC_007605.1 + 104943 0.66 0.841641
Target:  5'- gACCaacuaGCGGCGAgaCCCGAggcagacaaGGCCcCGCCAu -3'
miRNA:   3'- -UGG-----UGCUGUUg-GGGCU---------UCGGuGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.