miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 141515 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142941 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 81350 0.66 0.856408
Target:  5'- -aCACGGCAugGCCCCGuguccgguagcacAGGCCccaccuACGCCc -3'
miRNA:   3'- ugGUGCUGU--UGGGGC-------------UUCGG------UGCGGu -5'
33306 3' -58.1 NC_007605.1 + 141719 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 40256 0.66 0.857166
Target:  5'- aGCCGCGGCccagcgcGCCCCGuucacgggggAGGaCCGCgGCCGa -3'
miRNA:   3'- -UGGUGCUGu------UGGGGC----------UUC-GGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142840 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 162251 0.66 0.849499
Target:  5'- gACCugGACGcgGCCCUGcaGGGCCGgGUg- -3'
miRNA:   3'- -UGGugCUGU--UGGGGC--UUCGGUgCGgu -5'
33306 3' -58.1 NC_007605.1 + 141922 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 141107 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 154631 0.66 0.864639
Target:  5'- gACCGgGACGGCUaCCagGggGCCAcCGUCAu -3'
miRNA:   3'- -UGGUgCUGUUGG-GG--CuuCGGU-GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 141617 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142738 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142228 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142024 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 132247 0.66 0.833602
Target:  5'- aGCCuACuGCcccuACCCCGAAGCCccguaGCCGg -3'
miRNA:   3'- -UGG-UGcUGu---UGGGGCUUCGGug---CGGU- -5'
33306 3' -58.1 NC_007605.1 + 143043 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 51147 0.66 0.833602
Target:  5'- cACCAuCGACuGCCUCGggGUCACa--- -3'
miRNA:   3'- -UGGU-GCUGuUGGGGCuuCGGUGcggu -5'
33306 3' -58.1 NC_007605.1 + 142330 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 75067 0.66 0.825387
Target:  5'- gACUgaGCGcACGGCCUC-AAGCUugGCCAc -3'
miRNA:   3'- -UGG--UGC-UGUUGGGGcUUCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 104943 0.66 0.841641
Target:  5'- gACCaacuaGCGGCGAgaCCCGAggcagacaaGGCCcCGCCAu -3'
miRNA:   3'- -UGG-----UGCUGUUg-GGGCU---------UCGGuGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.