Results 81 - 100 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33306 | 3' | -58.1 | NC_007605.1 | + | 5006 | 0.67 | 0.781938 |
Target: 5'- gGCCAgGgACucuGCCCUGGcaGGCCGUGCCAc -3' miRNA: 3'- -UGGUgC-UGu--UGGGGCU--UCGGUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 51570 | 0.67 | 0.799762 |
Target: 5'- gGCCAuCGugAgGCCCCG--GCCGCGUUAa -3' miRNA: 3'- -UGGU-GCugU-UGGGGCuuCGGUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 41296 | 0.67 | 0.799762 |
Target: 5'- cACCAUGACAcacuaaGCCCCuGcuaauccauGAGCCcCGCCu -3' miRNA: 3'- -UGGUGCUGU------UGGGG-C---------UUCGGuGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 44461 | 0.67 | 0.811896 |
Target: 5'- cACCugGACAccgacuucacgcuauGCgCCGAGGCCuuugAgGCCGu -3' miRNA: 3'- -UGGugCUGU---------------UGgGGCUUCGG----UgCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 113772 | 0.67 | 0.790919 |
Target: 5'- gGCCugGGCuaucguCCuCCGuccAGCCACGCa- -3' miRNA: 3'- -UGGugCUGuu----GG-GGCu--UCGGUGCGgu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 144112 | 0.67 | 0.799762 |
Target: 5'- cACCAUGACAcacuaaGCCCCuGcuaauccauGAGCCcCGCCu -3' miRNA: 3'- -UGGUGCUGU------UGGGG-C---------UUCGGuGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 102557 | 0.67 | 0.808459 |
Target: 5'- gACCuuCGACAGCCCgGu-GCaGCGCCu -3' miRNA: 3'- -UGGu-GCUGUUGGGgCuuCGgUGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 76957 | 0.67 | 0.808459 |
Target: 5'- gACCACGAgaaucaaaCGACCCCaacGCCAC-CCGa -3' miRNA: 3'- -UGGUGCU--------GUUGGGGcuuCGGUGcGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 50361 | 0.67 | 0.817004 |
Target: 5'- gGCCGCGguggGCugcCCCCGAGGacggGCGCCGg -3' miRNA: 3'- -UGGUGC----UGuu-GGGGCUUCgg--UGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 65118 | 0.67 | 0.784646 |
Target: 5'- cGCCGucaaggcCGGCAGCCCCuucauccuuuugaagGAGGCCugcaACGCCc -3' miRNA: 3'- -UGGU-------GCUGUUGGGG---------------CUUCGG----UGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 67867 | 0.67 | 0.790919 |
Target: 5'- gGCCACGGCGGCCagCCGggGgCCu--CCAu -3' miRNA: 3'- -UGGUGCUGUUGG--GGCuuC-GGugcGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 166948 | 0.67 | 0.799762 |
Target: 5'- aGCCACcccuGCCCCGAGGaCCcagACGUCAg -3' miRNA: 3'- -UGGUGcuguUGGGGCUUC-GG---UGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 158782 | 0.67 | 0.799762 |
Target: 5'- cACCACGguGCAGCCUacc-GCCACGCg- -3' miRNA: 3'- -UGGUGC--UGUUGGGgcuuCGGUGCGgu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 44780 | 0.67 | 0.799762 |
Target: 5'- aACC-CGAUGGCCCCGGucaccccagauGCCgugaaugcACGCCAa -3' miRNA: 3'- -UGGuGCUGUUGGGGCUu----------CGG--------UGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 2954 | 0.67 | 0.816157 |
Target: 5'- gGCCACGACcggcACCCCGcuuuuggcauggcAuucAGCCGcCGCCc -3' miRNA: 3'- -UGGUGCUGu---UGGGGC-------------U---UCGGU-GCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 91534 | 0.67 | 0.817004 |
Target: 5'- cCCuaACGcCAGCCCCGguGCCccaGCCAc -3' miRNA: 3'- uGG--UGCuGUUGGGGCuuCGGug-CGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 80822 | 0.67 | 0.817004 |
Target: 5'- aACCACuGGCGAuCCCCGggGguacaUCGCGgCAg -3' miRNA: 3'- -UGGUG-CUGUU-GGGGCuuC-----GGUGCgGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 46643 | 0.67 | 0.817004 |
Target: 5'- cACgCugGACc-CCaCCGAGGcCCugGCCAc -3' miRNA: 3'- -UG-GugCUGuuGG-GGCUUC-GGugCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 158406 | 0.67 | 0.794473 |
Target: 5'- gACCGCGACggaguuaacaucaccGucaaccuaaaGCCCaccgGggGCCugGCCAa -3' miRNA: 3'- -UGGUGCUG---------------U----------UGGGg---CuuCGGugCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 159618 | 0.67 | 0.799762 |
Target: 5'- cGCCAgGugG-CCaCCGAgGGUCugGCCAa -3' miRNA: 3'- -UGGUgCugUuGG-GGCU-UCGGugCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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