Results 21 - 40 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33306 | 3' | -58.1 | NC_007605.1 | + | 49784 | 0.75 | 0.384379 |
Target: 5'- gGCgGCGGCAGucgcCCCCGAAGUCGCgGCCc -3' miRNA: 3'- -UGgUGCUGUU----GGGGCUUCGGUG-CGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 2672 | 0.74 | 0.392571 |
Target: 5'- gACCGCcacCGGCCCCGGAGCagAUGCCAg -3' miRNA: 3'- -UGGUGcu-GUUGGGGCUUCGg-UGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 45288 | 0.74 | 0.40004 |
Target: 5'- uCUGCGAgAGCCUCGggGCCcacccggACGCCAa -3' miRNA: 3'- uGGUGCUgUUGGGGCuuCGG-------UGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 171119 | 0.73 | 0.480352 |
Target: 5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3' miRNA: 3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 171657 | 0.73 | 0.480352 |
Target: 5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3' miRNA: 3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 130027 | 0.73 | 0.452963 |
Target: 5'- cACCAUGACAGCCgCC--AGCUACGCUc -3' miRNA: 3'- -UGGUGCUGUUGG-GGcuUCGGUGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 170059 | 0.73 | 0.480352 |
Target: 5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3' miRNA: 3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 92303 | 0.73 | 0.452963 |
Target: 5'- gGCCAUGAUGGCCgCGcGGuCCACGCCc -3' miRNA: 3'- -UGGUGCUGUUGGgGCuUC-GGUGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 5501 | 0.73 | 0.47113 |
Target: 5'- --gACG-CAGCCCCgGAGGCCACGCa- -3' miRNA: 3'- uggUGCuGUUGGGG-CUUCGGUGCGgu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 170597 | 0.73 | 0.480352 |
Target: 5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3' miRNA: 3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 160727 | 0.72 | 0.48966 |
Target: 5'- cGCCGCcaGCAGCCCCGAcaucGCCGCcCCAg -3' miRNA: 3'- -UGGUGc-UGUUGGGGCUu---CGGUGcGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 146397 | 0.72 | 0.508523 |
Target: 5'- gGCCaguACGGCcACCCCuguGCCACGCCc -3' miRNA: 3'- -UGG---UGCUGuUGGGGcuuCGGUGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 64463 | 0.72 | 0.499052 |
Target: 5'- cUCAgGGCAGCCCUGcagcGGGCCAgGCCGg -3' miRNA: 3'- uGGUgCUGUUGGGGC----UUCGGUgCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 53844 | 0.72 | 0.527686 |
Target: 5'- gGCCAgGGCGGCCUCGAggggAGCCugGaCAg -3' miRNA: 3'- -UGGUgCUGUUGGGGCU----UCGGugCgGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 80618 | 0.72 | 0.527686 |
Target: 5'- uGCCGCGAUGuacCCCCGggGau-CGCCAg -3' miRNA: 3'- -UGGUGCUGUu--GGGGCuuCgguGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 69725 | 0.72 | 0.508523 |
Target: 5'- cCCAgGuACAGCCCCccgGAGGCCAuCGCCc -3' miRNA: 3'- uGGUgC-UGUUGGGG---CUUCGGU-GCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 104876 | 0.72 | 0.505674 |
Target: 5'- uCCGCGACcugacccggagacuGGCCCCcGGGCgGCGCCGa -3' miRNA: 3'- uGGUGCUG--------------UUGGGGcUUCGgUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 91938 | 0.72 | 0.502831 |
Target: 5'- gGCCAgGGCcgaGGCCCCGcgccugcgggccccaAAGUCGCGCCGg -3' miRNA: 3'- -UGGUgCUG---UUGGGGC---------------UUCGGUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 160367 | 0.72 | 0.499052 |
Target: 5'- aACCACGGCAACCCUuccacggcaGAGGggacCCACGUCu -3' miRNA: 3'- -UGGUGCUGUUGGGG---------CUUC----GGUGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 105072 | 0.72 | 0.518069 |
Target: 5'- -gUugGGCaAACCCCgGggGCCGCGCUc -3' miRNA: 3'- ugGugCUG-UUGGGG-CuuCGGUGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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