miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 30802 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 27733 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 24664 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 21595 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 159993 0.7 0.616532
Target:  5'- uGCCucCGGCcGCCCCGGgcccgGGaCCGCGCCc -3'
miRNA:   3'- -UGGu-GCUGuUGGGGCU-----UC-GGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 12388 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 15457 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 28040 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 154330 0.7 0.616532
Target:  5'- aGCUGCuGGCGGCCUgCGAGGauCCGCGCCAa -3'
miRNA:   3'- -UGGUG-CUGUUGGG-GCUUC--GGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 21902 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 122549 0.69 0.686464
Target:  5'- gGCCACGuGCugaaaguccACCCCGAGGCCGCa--- -3'
miRNA:   3'- -UGGUGC-UGu--------UGGGGCUUCGGUGcggu -5'
33306 3' -58.1 NC_007605.1 + 51131 0.69 0.706177
Target:  5'- aGCCcuCGuuuCGGCCCCGAaauagGGCCuuGCCAu -3'
miRNA:   3'- -UGGu-GCu--GUUGGGGCU-----UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 62392 0.69 0.706177
Target:  5'- gACCGCGAgCAccuCCCCGcuGCCcucuucgaugauGCGCCGg -3'
miRNA:   3'- -UGGUGCU-GUu--GGGGCuuCGG------------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 155649 0.69 0.706177
Target:  5'- uCCACGuccaGACCCUGAGGC-GCGCUg -3'
miRNA:   3'- uGGUGCug--UUGGGGCUUCGgUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 73311 0.69 0.706177
Target:  5'- uCCACu--GGCCCCGGcagguGGCCugGCCGg -3'
miRNA:   3'- uGGUGcugUUGGGGCU-----UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 64120 0.69 0.693387
Target:  5'- gGCCAacucaGACCCCGAGGCUgauguccuggccggGCGCCu -3'
miRNA:   3'- -UGGUgcug-UUGGGGCUUCGG--------------UGCGGu -5'
33306 3' -58.1 NC_007605.1 + 152455 0.69 0.686464
Target:  5'- cCCACgGugGACCCgGggGCCAUGgUg -3'
miRNA:   3'- uGGUG-CugUUGGGgCuuCGGUGCgGu -5'
33306 3' -58.1 NC_007605.1 + 5305 0.69 0.676538
Target:  5'- uGCUGCGugGcCUCCGggGCUGCGUCc -3'
miRNA:   3'- -UGGUGCugUuGGGGCuuCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 4281 0.69 0.686464
Target:  5'- gGCCACGACcccacgGGCaCCCGAGGCguUGUCu -3'
miRNA:   3'- -UGGUGCUG------UUG-GGGCUUCGguGCGGu -5'
33306 3' -58.1 NC_007605.1 + 114182 0.69 0.680513
Target:  5'- cCCugGACugccuuagugaagagAACCUCG-GGCCugGCCAc -3'
miRNA:   3'- uGGugCUG---------------UUGGGGCuUCGGugCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.