miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 55890 1.07 0.002666
Target:  5'- aACCACGACAACCCCGAAGCCACGCCAc -3'
miRNA:   3'- -UGGUGCUGUUGGGGCUUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 162407 0.76 0.301992
Target:  5'- --aAUGACAACCCCG-GGCUugGCCAg -3'
miRNA:   3'- uggUGCUGUUGGGGCuUCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 74082 0.76 0.315901
Target:  5'- -gCGCaGACAGCCCaCGAucuugggacgcAGCCACGCCAc -3'
miRNA:   3'- ugGUG-CUGUUGGG-GCU-----------UCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 150745 0.76 0.330289
Target:  5'- gACCACGuccCGuguCCcagCCGAGGCCGCGCCAg -3'
miRNA:   3'- -UGGUGCu--GUu--GG---GGCUUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 15246 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 12177 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 33660 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 30591 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 27522 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 24453 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 21384 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 18315 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 34449 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 31380 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 28311 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 25242 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 22173 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 19105 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 16036 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 12967 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.