miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 49784 0.75 0.384379
Target:  5'- gGCgGCGGCAGucgcCCCCGAAGUCGCgGCCc -3'
miRNA:   3'- -UGgUGCUGUU----GGGGCUUCGGUG-CGGu -5'
33306 3' -58.1 NC_007605.1 + 2672 0.74 0.392571
Target:  5'- gACCGCcacCGGCCCCGGAGCagAUGCCAg -3'
miRNA:   3'- -UGGUGcu-GUUGGGGCUUCGg-UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 45288 0.74 0.40004
Target:  5'- uCUGCGAgAGCCUCGggGCCcacccggACGCCAa -3'
miRNA:   3'- uGGUGCUgUUGGGGCuuCGG-------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 130027 0.73 0.452963
Target:  5'- cACCAUGACAGCCgCC--AGCUACGCUc -3'
miRNA:   3'- -UGGUGCUGUUGG-GGcuUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 92303 0.73 0.452963
Target:  5'- gGCCAUGAUGGCCgCGcGGuCCACGCCc -3'
miRNA:   3'- -UGGUGCUGUUGGgGCuUC-GGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 5501 0.73 0.47113
Target:  5'- --gACG-CAGCCCCgGAGGCCACGCa- -3'
miRNA:   3'- uggUGCuGUUGGGG-CUUCGGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 170059 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 170597 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 171119 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 171657 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 160727 0.72 0.48966
Target:  5'- cGCCGCcaGCAGCCCCGAcaucGCCGCcCCAg -3'
miRNA:   3'- -UGGUGc-UGUUGGGGCUu---CGGUGcGGU- -5'
33306 3' -58.1 NC_007605.1 + 160367 0.72 0.499052
Target:  5'- aACCACGGCAACCCUuccacggcaGAGGggacCCACGUCu -3'
miRNA:   3'- -UGGUGCUGUUGGGG---------CUUC----GGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 64463 0.72 0.499052
Target:  5'- cUCAgGGCAGCCCUGcagcGGGCCAgGCCGg -3'
miRNA:   3'- uGGUgCUGUUGGGGC----UUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 91938 0.72 0.502831
Target:  5'- gGCCAgGGCcgaGGCCCCGcgccugcgggccccaAAGUCGCGCCGg -3'
miRNA:   3'- -UGGUgCUG---UUGGGGC---------------UUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 104876 0.72 0.505674
Target:  5'- uCCGCGACcugacccggagacuGGCCCCcGGGCgGCGCCGa -3'
miRNA:   3'- uGGUGCUG--------------UUGGGGcUUCGgUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 146397 0.72 0.508523
Target:  5'- gGCCaguACGGCcACCCCuguGCCACGCCc -3'
miRNA:   3'- -UGG---UGCUGuUGGGGcuuCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 92047 0.72 0.508523
Target:  5'- aGCC-CGACcauGCCCCuGAAGCCcggugcccaaaGCGCCGa -3'
miRNA:   3'- -UGGuGCUGu--UGGGG-CUUCGG-----------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 60483 0.72 0.508523
Target:  5'- cGCCAgGugGGCCCU--GGCCACgGCCGa -3'
miRNA:   3'- -UGGUgCugUUGGGGcuUCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 69725 0.72 0.508523
Target:  5'- cCCAgGuACAGCCCCccgGAGGCCAuCGCCc -3'
miRNA:   3'- uGGUgC-UGUUGGGG---CUUCGGU-GCGGu -5'
33306 3' -58.1 NC_007605.1 + 105072 0.72 0.518069
Target:  5'- -gUugGGCaAACCCCgGggGCCGCGCUc -3'
miRNA:   3'- ugGugCUG-UUGGGG-CuuCGGUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.