miRNA display CGI


Results 61 - 80 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 170322 0.71 0.596541
Target:  5'- cACCGCccGCAGcCCCCGGAGCC-CGCgGa -3'
miRNA:   3'- -UGGUGc-UGUU-GGGGCUUCGGuGCGgU- -5'
33306 3' -58.1 NC_007605.1 + 171382 0.71 0.596541
Target:  5'- cACCGCccGCAGcCCCCGGAGCC-CGCgGa -3'
miRNA:   3'- -UGGUGc-UGUU-GGGGCUUCGGuGCGgU- -5'
33306 3' -58.1 NC_007605.1 + 169785 0.71 0.596541
Target:  5'- cACCGCccGCAGcCCCCGGAGCC-CGCgGa -3'
miRNA:   3'- -UGGUGc-UGUU-GGGGCUUCGGuGCGgU- -5'
33306 3' -58.1 NC_007605.1 + 63356 0.7 0.606527
Target:  5'- uGCUguACGACAGCCCCGcAAcCCugGCUg -3'
miRNA:   3'- -UGG--UGCUGUUGGGGC-UUcGGugCGGu -5'
33306 3' -58.1 NC_007605.1 + 134833 0.7 0.616532
Target:  5'- gGCCACGGCGugCCaGAGGCCcucguagucguGCGCa- -3'
miRNA:   3'- -UGGUGCUGUugGGgCUUCGG-----------UGCGgu -5'
33306 3' -58.1 NC_007605.1 + 120414 0.7 0.616532
Target:  5'- -gCAUGACAACCCgGGAGUaCACGUUAa -3'
miRNA:   3'- ugGUGCUGUUGGGgCUUCG-GUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 12388 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 15457 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 21595 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 18526 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 24664 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 159993 0.7 0.616532
Target:  5'- uGCCucCGGCcGCCCCGGgcccgGGaCCGCGCCc -3'
miRNA:   3'- -UGGu-GCUGuUGGGGCU-----UC-GGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 30802 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 33871 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 27733 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 154330 0.7 0.616532
Target:  5'- aGCUGCuGGCGGCCUgCGAGGauCCGCGCCAa -3'
miRNA:   3'- -UGGUG-CUGUUGGG-GCUUC--GGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 159721 0.7 0.626548
Target:  5'- aGCCGCucCGugGCCCCgGGAGCCACGgCGu -3'
miRNA:   3'- -UGGUGcuGU--UGGGG-CUUCGGUGCgGU- -5'
33306 3' -58.1 NC_007605.1 + 151394 0.7 0.636568
Target:  5'- gGCCACGGCcagGGCCUCGuAGGCCGagacgggcaGCCGg -3'
miRNA:   3'- -UGGUGCUG---UUGGGGC-UUCGGUg--------CGGU- -5'
33306 3' -58.1 NC_007605.1 + 45090 0.7 0.646585
Target:  5'- uCCGgGugGGCCCCGAGGCUcuCGCa- -3'
miRNA:   3'- uGGUgCugUUGGGGCUUCGGu-GCGgu -5'
33306 3' -58.1 NC_007605.1 + 137706 0.7 0.646585
Target:  5'- aAUUGCaGugGACCCCGGAGCCACaCUg -3'
miRNA:   3'- -UGGUG-CugUUGGGGCUUCGGUGcGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.