miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 21902 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 12695 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 15764 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 18833 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 34177 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 137706 0.7 0.646585
Target:  5'- aAUUGCaGugGACCCCGGAGCCACaCUg -3'
miRNA:   3'- -UGGUG-CugUUGGGGCUUCGGUGcGGu -5'
33306 3' -58.1 NC_007605.1 + 28040 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 158161 0.7 0.656591
Target:  5'- gGCguaGCGGCGcACCCCGuuGGCCAgGCCc -3'
miRNA:   3'- -UGg--UGCUGU-UGGGGCu-UCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 159023 0.7 0.656591
Target:  5'- -aCGCGGuCAGCCCCGGccaGGCCcUGCCc -3'
miRNA:   3'- ugGUGCU-GUUGGGGCU---UCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 158166 0.7 0.656591
Target:  5'- --aGCGGCGcACCCCGuuGGCCAgGCCc -3'
miRNA:   3'- uggUGCUGU-UGGGGCu-UCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 143260 0.69 0.666578
Target:  5'- gUCugGACGACgCUGGcgAGCCGgGCCAg -3'
miRNA:   3'- uGGugCUGUUGgGGCU--UCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 133869 0.69 0.666578
Target:  5'- gAUCAgGGCAGCCUgGAGGUCugGCa- -3'
miRNA:   3'- -UGGUgCUGUUGGGgCUUCGGugCGgu -5'
33306 3' -58.1 NC_007605.1 + 169780 0.69 0.675544
Target:  5'- gGCgGgGACAgagaggcggucgcGCCCCc-GGCCGCGCCAg -3'
miRNA:   3'- -UGgUgCUGU-------------UGGGGcuUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 171378 0.69 0.675544
Target:  5'- gGCgGgGACAgagaggcggucgcGCCCCc-GGCCGCGCCAg -3'
miRNA:   3'- -UGgUgCUGU-------------UGGGGcuUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 170318 0.69 0.675544
Target:  5'- gGCgGgGACAgagaggcggucgcGCCCCc-GGCCGCGCCAg -3'
miRNA:   3'- -UGgUgCUGU-------------UGGGGcuUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 170840 0.69 0.675544
Target:  5'- gGCgGgGACAgagaggcggucgcGCCCCc-GGCCGCGCCAg -3'
miRNA:   3'- -UGgUgCUGU-------------UGGGGcuUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 5305 0.69 0.676538
Target:  5'- uGCUGCGugGcCUCCGggGCUGCGUCc -3'
miRNA:   3'- -UGGUGCugUuGGGGCuuCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 114182 0.69 0.680513
Target:  5'- cCCugGACugccuuagugaagagAACCUCG-GGCCugGCCAc -3'
miRNA:   3'- uGGugCUG---------------UUGGGGCuUCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 4281 0.69 0.686464
Target:  5'- gGCCACGACcccacgGGCaCCCGAGGCguUGUCu -3'
miRNA:   3'- -UGGUGCUG------UUG-GGGCUUCGguGCGGu -5'
33306 3' -58.1 NC_007605.1 + 122549 0.69 0.686464
Target:  5'- gGCCACGuGCugaaaguccACCCCGAGGCCGCa--- -3'
miRNA:   3'- -UGGUGC-UGu--------UGGGGCUUCGGUGcggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.