miRNA display CGI


Results 101 - 120 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 4281 0.69 0.686464
Target:  5'- gGCCACGACcccacgGGCaCCCGAGGCguUGUCu -3'
miRNA:   3'- -UGGUGCUG------UUG-GGGCUUCGguGCGGu -5'
33306 3' -58.1 NC_007605.1 + 39099 0.69 0.686464
Target:  5'- cGCC-CGGCuGCCCCGGAGC---GCCAg -3'
miRNA:   3'- -UGGuGCUGuUGGGGCUUCGgugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 64120 0.69 0.693387
Target:  5'- gGCCAacucaGACCCCGAGGCUgauguccuggccggGCGCCu -3'
miRNA:   3'- -UGGUgcug-UUGGGGCUUCGG--------------UGCGGu -5'
33306 3' -58.1 NC_007605.1 + 16539 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 19608 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 25746 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 55985 0.69 0.696346
Target:  5'- uCCugGACGACaUCGAggcaauguugGGCCugGCCGg -3'
miRNA:   3'- uGGugCUGUUGgGGCU----------UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 22677 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 34953 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 31884 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 62954 0.69 0.696346
Target:  5'- uGCUGCugucugggGACGACCCCGcuGCC-CGCCu -3'
miRNA:   3'- -UGGUG--------CUGUUGGGGCuuCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 28815 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 13470 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 3871 0.69 0.702252
Target:  5'- cGCCAgCGGCAgguccaggggaccuACCCCGGGcugcuguGCCACGCg- -3'
miRNA:   3'- -UGGU-GCUGU--------------UGGGGCUU-------CGGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 73311 0.69 0.706177
Target:  5'- uCCACu--GGCCCCGGcagguGGCCugGCCGg -3'
miRNA:   3'- uGGUGcugUUGGGGCU-----UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 155649 0.69 0.706177
Target:  5'- uCCACGuccaGACCCUGAGGC-GCGCUg -3'
miRNA:   3'- uGGUGCug--UUGGGGCUUCGgUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 51131 0.69 0.706177
Target:  5'- aGCCcuCGuuuCGGCCCCGAaauagGGCCuuGCCAu -3'
miRNA:   3'- -UGGu-GCu--GUUGGGGCU-----UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 62392 0.69 0.706177
Target:  5'- gACCGCGAgCAccuCCCCGcuGCCcucuucgaugauGCGCCGg -3'
miRNA:   3'- -UGGUGCU-GUu--GGGGCuuCGG------------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 133191 0.69 0.706177
Target:  5'- uAUCAaGACGugCCCGGAGa-GCGCCAu -3'
miRNA:   3'- -UGGUgCUGUugGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 160904 0.69 0.715948
Target:  5'- uCCugGGCuGCCCCGGGcCCACcCCAc -3'
miRNA:   3'- uGGugCUGuUGGGGCUUcGGUGcGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.