miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 143145 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142228 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 141311 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142126 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 141515 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142738 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 141617 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142432 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142024 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 143043 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 39609 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 141413 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 160853 0.66 0.857166
Target:  5'- cACC-CGGCGGacCCCCGGAGUCugGaCGu -3'
miRNA:   3'- -UGGuGCUGUU--GGGGCUUCGGugCgGU- -5'
33306 3' -58.1 NC_007605.1 + 141107 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 142941 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 143247 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 135033 0.66 0.857166
Target:  5'- gACUACGAgGGCCUCu--GgCACGCCGu -3'
miRNA:   3'- -UGGUGCUgUUGGGGcuuCgGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 142636 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 141209 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 141922 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.