miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 141107 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 143145 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 141005 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 39234 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 39359 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 39734 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 135033 0.66 0.857166
Target:  5'- gACUACGAgGGCCUCu--GgCACGCCGu -3'
miRNA:   3'- -UGGUGCUgUUGGGGcuuCgGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 160853 0.66 0.857166
Target:  5'- cACC-CGGCGGacCCCCGGAGUCugGaCGu -3'
miRNA:   3'- -UGGuGCUGUU--GGGGCUUCGGugCgGU- -5'
33306 3' -58.1 NC_007605.1 + 39609 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 142126 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 52959 0.66 0.856408
Target:  5'- gACCugGcagACAACCCCauuguggccauGAcacuuuuAGCgCACGCCAg -3'
miRNA:   3'- -UGGugC---UGUUGGGG-----------CU-------UCG-GUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 81350 0.66 0.856408
Target:  5'- -aCACGGCAugGCCCCGuguccgguagcacAGGCCccaccuACGCCc -3'
miRNA:   3'- ugGUGCUGU--UGGGGC-------------UUCGG------UGCGGu -5'
33306 3' -58.1 NC_007605.1 + 103066 0.66 0.852589
Target:  5'- aGCgGCGuCAGcCCCCgccgcaguugcggcaGAAGCCGCGUCu -3'
miRNA:   3'- -UGgUGCuGUU-GGGG---------------CUUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 84485 0.66 0.849499
Target:  5'- aGCCAUGGCAACCUUu--GCCugGgCCc -3'
miRNA:   3'- -UGGUGCUGUUGGGGcuuCGGugC-GGu -5'
33306 3' -58.1 NC_007605.1 + 123359 0.66 0.849499
Target:  5'- aGCCgguGC-ACAGCCCUGu-GCCugGCCc -3'
miRNA:   3'- -UGG---UGcUGUUGGGGCuuCGGugCGGu -5'
33306 3' -58.1 NC_007605.1 + 162251 0.66 0.849499
Target:  5'- gACCugGACGcgGCCCUGcaGGGCCGgGUg- -3'
miRNA:   3'- -UGGugCUGU--UGGGGC--UUCGGUgCGgu -5'
33306 3' -58.1 NC_007605.1 + 61647 0.66 0.849499
Target:  5'- cACCGCGAgcggGACaCCCGggGCacagAgGCCAg -3'
miRNA:   3'- -UGGUGCUg---UUG-GGGCuuCGg---UgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 162536 0.66 0.844807
Target:  5'- uACCACGugaugcaguacucguGCAACCCCuuugcgcAGCC-CGCCu -3'
miRNA:   3'- -UGGUGC---------------UGUUGGGGcu-----UCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 104943 0.66 0.841641
Target:  5'- gACCaacuaGCGGCGAgaCCCGAggcagacaaGGCCcCGCCAu -3'
miRNA:   3'- -UGG-----UGCUGUUg-GGGCU---------UCGGuGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 171355 0.66 0.841641
Target:  5'- gACCcCGACc-CCCCGccGCC-CGCCc -3'
miRNA:   3'- -UGGuGCUGuuGGGGCuuCGGuGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.