miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 80822 0.67 0.817004
Target:  5'- aACCACuGGCGAuCCCCGggGguacaUCGCGgCAg -3'
miRNA:   3'- -UGGUG-CUGUU-GGGGCuuC-----GGUGCgGU- -5'
33306 3' -58.1 NC_007605.1 + 91534 0.67 0.817004
Target:  5'- cCCuaACGcCAGCCCCGguGCCccaGCCAc -3'
miRNA:   3'- uGG--UGCuGUUGGGGCuuCGGug-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 50361 0.67 0.817004
Target:  5'- gGCCGCGguggGCugcCCCCGAGGacggGCGCCGg -3'
miRNA:   3'- -UGGUGC----UGuu-GGGGCUUCgg--UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 46643 0.67 0.817004
Target:  5'- cACgCugGACc-CCaCCGAGGcCCugGCCAc -3'
miRNA:   3'- -UG-GugCUGuuGG-GGCUUC-GGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 2954 0.67 0.816157
Target:  5'- gGCCACGACcggcACCCCGcuuuuggcauggcAuucAGCCGcCGCCc -3'
miRNA:   3'- -UGGUGCUGu---UGGGGC-------------U---UCGGU-GCGGu -5'
33306 3' -58.1 NC_007605.1 + 44461 0.67 0.811896
Target:  5'- cACCugGACAccgacuucacgcuauGCgCCGAGGCCuuugAgGCCGu -3'
miRNA:   3'- -UGGugCUGU---------------UGgGGCUUCGG----UgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 76957 0.67 0.808459
Target:  5'- gACCACGAgaaucaaaCGACCCCaacGCCAC-CCGa -3'
miRNA:   3'- -UGGUGCU--------GUUGGGGcuuCGGUGcGGU- -5'
33306 3' -58.1 NC_007605.1 + 102557 0.67 0.808459
Target:  5'- gACCuuCGACAGCCCgGu-GCaGCGCCu -3'
miRNA:   3'- -UGGu-GCUGUUGGGgCuuCGgUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 41296 0.67 0.799762
Target:  5'- cACCAUGACAcacuaaGCCCCuGcuaauccauGAGCCcCGCCu -3'
miRNA:   3'- -UGGUGCUGU------UGGGG-C---------UUCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 51570 0.67 0.799762
Target:  5'- gGCCAuCGugAgGCCCCG--GCCGCGUUAa -3'
miRNA:   3'- -UGGU-GCugU-UGGGGCuuCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 144112 0.67 0.799762
Target:  5'- cACCAUGACAcacuaaGCCCCuGcuaauccauGAGCCcCGCCu -3'
miRNA:   3'- -UGGUGCUGU------UGGGG-C---------UUCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 166948 0.67 0.799762
Target:  5'- aGCCACcccuGCCCCGAGGaCCcagACGUCAg -3'
miRNA:   3'- -UGGUGcuguUGGGGCUUC-GG---UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 44780 0.67 0.799762
Target:  5'- aACC-CGAUGGCCCCGGucaccccagauGCCgugaaugcACGCCAa -3'
miRNA:   3'- -UGGuGCUGUUGGGGCUu----------CGG--------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 159618 0.67 0.799762
Target:  5'- cGCCAgGugG-CCaCCGAgGGUCugGCCAa -3'
miRNA:   3'- -UGGUgCugUuGG-GGCU-UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 158782 0.67 0.799762
Target:  5'- cACCACGguGCAGCCUacc-GCCACGCg- -3'
miRNA:   3'- -UGGUGC--UGUUGGGgcuuCGGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 158406 0.67 0.794473
Target:  5'- gACCGCGACggaguuaacaucaccGucaaccuaaaGCCCaccgGggGCCugGCCAa -3'
miRNA:   3'- -UGGUGCUG---------------U----------UGGGg---CuuCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 129859 0.67 0.790919
Target:  5'- gGCUGCGugGACCuCCGcuGgUugGCCAa -3'
miRNA:   3'- -UGGUGCugUUGG-GGCuuCgGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 158097 0.67 0.790919
Target:  5'- gACUACGACAACcgagggacgaaCCCGcaAGGCgaACGCCGa -3'
miRNA:   3'- -UGGUGCUGUUG-----------GGGC--UUCGg-UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 170844 0.67 0.790919
Target:  5'- cACCGCccGCAGCCCCcGGGCC-CGCgGa -3'
miRNA:   3'- -UGGUGc-UGUUGGGGcUUCGGuGCGgU- -5'
33306 3' -58.1 NC_007605.1 + 67867 0.67 0.790919
Target:  5'- gGCCACGGCGGCCagCCGggGgCCu--CCAu -3'
miRNA:   3'- -UGGUGCUGUUGG--GGCuuC-GGugcGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.