miRNA display CGI


Results 101 - 120 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 67867 0.67 0.790919
Target:  5'- gGCCACGGCGGCCagCCGggGgCCu--CCAu -3'
miRNA:   3'- -UGGUGCUGUUGG--GGCuuC-GGugcGGU- -5'
33306 3' -58.1 NC_007605.1 + 113772 0.67 0.790919
Target:  5'- gGCCugGGCuaucguCCuCCGuccAGCCACGCa- -3'
miRNA:   3'- -UGGugCUGuu----GG-GGCu--UCGGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 65118 0.67 0.784646
Target:  5'- cGCCGucaaggcCGGCAGCCCCuucauccuuuugaagGAGGCCugcaACGCCc -3'
miRNA:   3'- -UGGU-------GCUGUUGGGG---------------CUUCGG----UGCGGu -5'
33306 3' -58.1 NC_007605.1 + 83228 0.67 0.781938
Target:  5'- aAUCugGugGGuCCUCGGAGCCAgaUGCCc -3'
miRNA:   3'- -UGGugCugUU-GGGGCUUCGGU--GCGGu -5'
33306 3' -58.1 NC_007605.1 + 72969 0.67 0.781938
Target:  5'- uUCGCGuCAucACCCCccuaccuaGAGGCCAUGCUAu -3'
miRNA:   3'- uGGUGCuGU--UGGGG--------CUUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 65715 0.67 0.781938
Target:  5'- gGCCA-GGCccugcACCCCGAGGCCcauggAgGCCAu -3'
miRNA:   3'- -UGGUgCUGu----UGGGGCUUCGG-----UgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 5006 0.67 0.781938
Target:  5'- gGCCAgGgACucuGCCCUGGcaGGCCGUGCCAc -3'
miRNA:   3'- -UGGUgC-UGu--UGGGGCU--UCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 61742 0.67 0.781938
Target:  5'- cACCGCGA--GCCCCacGAGCCGCuucGCCc -3'
miRNA:   3'- -UGGUGCUguUGGGGc-UUCGGUG---CGGu -5'
33306 3' -58.1 NC_007605.1 + 64324 0.67 0.781938
Target:  5'- gGCCAgGACAucaGCCUCGggGUcugagUugGCCu -3'
miRNA:   3'- -UGGUgCUGU---UGGGGCuuCG-----GugCGGu -5'
33306 3' -58.1 NC_007605.1 + 150738 0.67 0.773746
Target:  5'- uGCCugGACGcuauucccccuccaCCCGGAGCacgACGCCGu -3'
miRNA:   3'- -UGGugCUGUug------------GGGCUUCGg--UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 136393 0.67 0.77283
Target:  5'- aACCugGACAacaaACCgCCGAGGCagacccCGCUAc -3'
miRNA:   3'- -UGGugCUGU----UGG-GGCUUCGgu----GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 48201 0.67 0.77283
Target:  5'- gGCCuCGGUAACCCCu-GGCCACgGCCc -3'
miRNA:   3'- -UGGuGCUGUUGGGGcuUCGGUG-CGGu -5'
33306 3' -58.1 NC_007605.1 + 47389 0.67 0.77283
Target:  5'- cCCAaGACA-CCCCGAGugcGUgACGCCAg -3'
miRNA:   3'- uGGUgCUGUuGGGGCUU---CGgUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 162037 0.67 0.77283
Target:  5'- aGCCGcCGGCcguacacccGGCCCUGcaGGGCCGCGuCCAg -3'
miRNA:   3'- -UGGU-GCUG---------UUGGGGC--UUCGGUGC-GGU- -5'
33306 3' -58.1 NC_007605.1 + 58105 0.67 0.771912
Target:  5'- gGCCGCGGaGGCCggggccgcggaggCCGggGCCGCagagGCCGg -3'
miRNA:   3'- -UGGUGCUgUUGG-------------GGCuuCGGUG----CGGU- -5'
33306 3' -58.1 NC_007605.1 + 58060 0.67 0.771912
Target:  5'- gGCCGCGGaGGCCggggccgcggaggCCGggGCCGCggagGCCGg -3'
miRNA:   3'- -UGGUGCUgUUGG-------------GGCuuCGGUG----CGGU- -5'
33306 3' -58.1 NC_007605.1 + 116465 0.67 0.770073
Target:  5'- cUCGCcACAGCCCCagcaggcaaacacgGAGGCCAUGCUc -3'
miRNA:   3'- uGGUGcUGUUGGGG--------------CUUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 85254 0.68 0.7636
Target:  5'- cCC-CGGCAgagGCCUCGggGggcgcccacucCCACGCCAc -3'
miRNA:   3'- uGGuGCUGU---UGGGGCuuC-----------GGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 9928 0.68 0.7636
Target:  5'- uGCCACaGGCugaaaaccagGACCCUGAAGCCAaagaCCAu -3'
miRNA:   3'- -UGGUG-CUG----------UUGGGGCUUCGGUgc--GGU- -5'
33306 3' -58.1 NC_007605.1 + 85194 0.68 0.7636
Target:  5'- cCC-CGGCAgagGCCUCGggGggcgcccacucCCACGCCAc -3'
miRNA:   3'- uGGuGCUGU---UGGGGCuuC-----------GGUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.