miRNA display CGI


Results 1 - 20 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 2501 0.66 0.825387
Target:  5'- gGCCACcaGAagGGCCCUcugGAAGCC-CGCCGc -3'
miRNA:   3'- -UGGUG--CUg-UUGGGG---CUUCGGuGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 2672 0.74 0.392571
Target:  5'- gACCGCcacCGGCCCCGGAGCagAUGCCAg -3'
miRNA:   3'- -UGGUGcu-GUUGGGGCUUCGg-UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 2732 0.71 0.576649
Target:  5'- gACCAgGGCGGCggCUGAAuGCCAUGCCAa -3'
miRNA:   3'- -UGGUgCUGUUGg-GGCUU-CGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 2935 0.66 0.864639
Target:  5'- aGCCAuggagcggacUGACGGCCCCuccguGCCccuACGCCGa -3'
miRNA:   3'- -UGGU----------GCUGUUGGGGcuu--CGG---UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 2954 0.67 0.816157
Target:  5'- gGCCACGACcggcACCCCGcuuuuggcauggcAuucAGCCGcCGCCc -3'
miRNA:   3'- -UGGUGCUGu---UGGGGC-------------U---UCGGU-GCGGu -5'
33306 3' -58.1 NC_007605.1 + 3871 0.69 0.702252
Target:  5'- cGCCAgCGGCAgguccaggggaccuACCCCGGGcugcuguGCCACGCg- -3'
miRNA:   3'- -UGGU-GCUGU--------------UGGGGCUU-------CGGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 4281 0.69 0.686464
Target:  5'- gGCCACGACcccacgGGCaCCCGAGGCguUGUCu -3'
miRNA:   3'- -UGGUGCUG------UUG-GGGCUUCGguGCGGu -5'
33306 3' -58.1 NC_007605.1 + 5006 0.67 0.781938
Target:  5'- gGCCAgGgACucuGCCCUGGcaGGCCGUGCCAc -3'
miRNA:   3'- -UGGUgC-UGu--UGGGGCU--UCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 5305 0.69 0.676538
Target:  5'- uGCUGCGugGcCUCCGggGCUGCGUCc -3'
miRNA:   3'- -UGGUGCugUuGGGGCuuCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 5338 0.68 0.754259
Target:  5'- cCCACGGC--CCCC-AGGCCA-GCCAa -3'
miRNA:   3'- uGGUGCUGuuGGGGcUUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 5501 0.73 0.47113
Target:  5'- --gACG-CAGCCCCgGAGGCCACGCa- -3'
miRNA:   3'- uggUGCuGUUGGGG-CUUCGGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 9928 0.68 0.7636
Target:  5'- uGCCACaGGCugaaaaccagGACCCUGAAGCCAaagaCCAu -3'
miRNA:   3'- -UGGUG-CUG----------UUGGGGCUUCGGUgc--GGU- -5'
33306 3' -58.1 NC_007605.1 + 10667 0.66 0.860179
Target:  5'- gACCACGGuCcACCCCGcccucaagcguccggGAGCCGgGCg- -3'
miRNA:   3'- -UGGUGCU-GuUGGGGC---------------UUCGGUgCGgu -5'
33306 3' -58.1 NC_007605.1 + 12177 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 12388 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 12695 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 12762 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 12967 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 13024 0.68 0.744814
Target:  5'- aGCC-CgGGCGGCCCCaGAGGCCGguuccuCGCCc -3'
miRNA:   3'- -UGGuG-CUGUUGGGG-CUUCGGU------GCGGu -5'
33306 3' -58.1 NC_007605.1 + 13147 0.66 0.857166
Target:  5'- uGCCcCGACcucugGACUCUGggGCCugGgCCc -3'
miRNA:   3'- -UGGuGCUG-----UUGGGGCuuCGGugC-GGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.