miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 13470 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 15246 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 15457 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 15764 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 15831 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 16036 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 16093 0.68 0.744814
Target:  5'- aGCC-CgGGCGGCCCCaGAGGCCGguuccuCGCCc -3'
miRNA:   3'- -UGGuG-CUGUUGGGG-CUUCGGU------GCGGu -5'
33306 3' -58.1 NC_007605.1 + 16539 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 18315 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 18526 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 18833 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 18900 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 19105 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 19162 0.68 0.744814
Target:  5'- aGCC-CgGGCGGCCCCaGAGGCCGguuccuCGCCc -3'
miRNA:   3'- -UGGuG-CUGUUGGGG-CUUCGGU------GCGGu -5'
33306 3' -58.1 NC_007605.1 + 19608 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 21384 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 21595 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 21902 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 21968 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 22173 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.