miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 31438 0.68 0.744814
Target:  5'- aGCC-CgGGCGGCCCCaGAGGCCGguuccuCGCCc -3'
miRNA:   3'- -UGGuG-CUGUUGGGG-CUUCGGU------GCGGu -5'
33306 3' -58.1 NC_007605.1 + 31884 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 33660 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 33871 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 34177 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 34244 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 34449 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 34507 0.68 0.744814
Target:  5'- aGCC-CgGGCGGCCCCaGAGGCCGguuccuCGCCc -3'
miRNA:   3'- -UGGuG-CUGUUGGGG-CUUCGGU------GCGGu -5'
33306 3' -58.1 NC_007605.1 + 34953 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 38485 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 38610 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 38735 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 38860 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 38985 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 39099 0.69 0.686464
Target:  5'- cGCC-CGGCuGCCCCGGAGC---GCCAg -3'
miRNA:   3'- -UGGuGCUGuUGGGGCUUCGgugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 39234 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 39359 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 39484 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 39609 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 39734 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.