miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 39859 0.66 0.857166
Target:  5'- cACCgGCGGCcGCCCgGcuGCCcccggaGCGCCAg -3'
miRNA:   3'- -UGG-UGCUGuUGGGgCuuCGG------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 40023 0.66 0.841641
Target:  5'- cCCAgGGCGuGCCCCGcuuGCCugGUCc -3'
miRNA:   3'- uGGUgCUGU-UGGGGCuu-CGGugCGGu -5'
33306 3' -58.1 NC_007605.1 + 40256 0.66 0.857166
Target:  5'- aGCCGCGGCccagcgcGCCCCGuucacgggggAGGaCCGCgGCCGa -3'
miRNA:   3'- -UGGUGCUGu------UGGGGC----------UUC-GGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 40436 0.71 0.586579
Target:  5'- gGCCGCGGCugcccccugGACCCCuAGGCCuguGCCAu -3'
miRNA:   3'- -UGGUGCUG---------UUGGGGcUUCGGug-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 40445 0.68 0.735275
Target:  5'- gUCugGACGACgCUGGcgAGCCGgGCCGg -3'
miRNA:   3'- uGGugCUGUUGgGGCU--UCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 41296 0.67 0.799762
Target:  5'- cACCAUGACAcacuaaGCCCCuGcuaauccauGAGCCcCGCCu -3'
miRNA:   3'- -UGGUGCUGU------UGGGG-C---------UUCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 44461 0.67 0.811896
Target:  5'- cACCugGACAccgacuucacgcuauGCgCCGAGGCCuuugAgGCCGu -3'
miRNA:   3'- -UGGugCUGU---------------UGgGGCUUCGG----UgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 44780 0.67 0.799762
Target:  5'- aACC-CGAUGGCCCCGGucaccccagauGCCgugaaugcACGCCAa -3'
miRNA:   3'- -UGGuGCUGUUGGGGCUu----------CGG--------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 45090 0.7 0.646585
Target:  5'- uCCGgGugGGCCCCGAGGCUcuCGCa- -3'
miRNA:   3'- uGGUgCugUUGGGGCUUCGGu-GCGgu -5'
33306 3' -58.1 NC_007605.1 + 45288 0.74 0.40004
Target:  5'- uCUGCGAgAGCCUCGggGCCcacccggACGCCAa -3'
miRNA:   3'- uGGUGCUgUUGGGGCuuCGG-------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 46643 0.67 0.817004
Target:  5'- cACgCugGACc-CCaCCGAGGcCCugGCCAc -3'
miRNA:   3'- -UG-GugCUGuuGG-GGCUUC-GGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 46668 0.66 0.825387
Target:  5'- uCCAgGGgcagcuccCAACCCCucugcaccguGAAGCUGCGCCAc -3'
miRNA:   3'- uGGUgCU--------GUUGGGG----------CUUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 47389 0.67 0.77283
Target:  5'- cCCAaGACA-CCCCGAGugcGUgACGCCAg -3'
miRNA:   3'- uGGUgCUGUuGGGGCUU---CGgUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 48201 0.67 0.77283
Target:  5'- gGCCuCGGUAACCCCu-GGCCACgGCCc -3'
miRNA:   3'- -UGGuGCUGUUGGGGcuUCGGUG-CGGu -5'
33306 3' -58.1 NC_007605.1 + 49660 0.66 0.864639
Target:  5'- cCCACGACAccGCCCCacgcGGGgCACGUa- -3'
miRNA:   3'- uGGUGCUGU--UGGGGc---UUCgGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 49784 0.75 0.384379
Target:  5'- gGCgGCGGCAGucgcCCCCGAAGUCGCgGCCc -3'
miRNA:   3'- -UGgUGCUGUU----GGGGCUUCGGUG-CGGu -5'
33306 3' -58.1 NC_007605.1 + 50361 0.67 0.817004
Target:  5'- gGCCGCGguggGCugcCCCCGAGGacggGCGCCGg -3'
miRNA:   3'- -UGGUGC----UGuu-GGGGCUUCgg--UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 50586 0.68 0.754259
Target:  5'- gGCCACGGgGGCgCUGGcGGCCGgCGCCc -3'
miRNA:   3'- -UGGUGCUgUUGgGGCU-UCGGU-GCGGu -5'
33306 3' -58.1 NC_007605.1 + 51131 0.69 0.706177
Target:  5'- aGCCcuCGuuuCGGCCCCGAaauagGGCCuuGCCAu -3'
miRNA:   3'- -UGGu-GCu--GUUGGGGCU-----UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 51147 0.66 0.833602
Target:  5'- cACCAuCGACuGCCUCGggGUCACa--- -3'
miRNA:   3'- -UGGU-GCUGuUGGGGCuuCGGUGcggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.