miRNA display CGI


Results 101 - 120 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 51570 0.67 0.799762
Target:  5'- gGCCAuCGugAgGCCCCG--GCCGCGUUAa -3'
miRNA:   3'- -UGGU-GCugU-UGGGGCuuCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 51665 0.68 0.744814
Target:  5'- gGCCAgGAUGGCCacgguggGggGCCugGCCu -3'
miRNA:   3'- -UGGUgCUGUUGGgg-----CuuCGGugCGGu -5'
33306 3' -58.1 NC_007605.1 + 52959 0.66 0.856408
Target:  5'- gACCugGcagACAACCCCauuguggccauGAcacuuuuAGCgCACGCCAg -3'
miRNA:   3'- -UGGugC---UGUUGGGG-----------CU-------UCG-GUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 53844 0.72 0.527686
Target:  5'- gGCCAgGGCGGCCUCGAggggAGCCugGaCAg -3'
miRNA:   3'- -UGGUgCUGUUGGGGCU----UCGGugCgGU- -5'
33306 3' -58.1 NC_007605.1 + 54717 0.67 0.790919
Target:  5'- gGCC-CGcCAcCCCCGcGGCUAcCGCCAa -3'
miRNA:   3'- -UGGuGCuGUuGGGGCuUCGGU-GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 55890 1.07 0.002666
Target:  5'- aACCACGACAACCCCGAAGCCACGCCAc -3'
miRNA:   3'- -UGGUGCUGUUGGGGCUUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 55985 0.69 0.696346
Target:  5'- uCCugGACGACaUCGAggcaauguugGGCCugGCCGg -3'
miRNA:   3'- uGGugCUGUUGgGGCU----------UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 58060 0.67 0.771912
Target:  5'- gGCCGCGGaGGCCggggccgcggaggCCGggGCCGCggagGCCGg -3'
miRNA:   3'- -UGGUGCUgUUGG-------------GGCuuCGGUG----CGGU- -5'
33306 3' -58.1 NC_007605.1 + 58105 0.67 0.771912
Target:  5'- gGCCGCGGaGGCCggggccgcggaggCCGggGCCGCagagGCCGg -3'
miRNA:   3'- -UGGUGCUgUUGG-------------GGCuuCGGUG----CGGU- -5'
33306 3' -58.1 NC_007605.1 + 60483 0.72 0.508523
Target:  5'- cGCCAgGugGGCCCU--GGCCACgGCCGa -3'
miRNA:   3'- -UGGUgCugUUGGGGcuUCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 60757 0.71 0.576649
Target:  5'- --gACGACAGCCCCcaGggGCCccCGCCc -3'
miRNA:   3'- uggUGCUGUUGGGG--CuuCGGu-GCGGu -5'
33306 3' -58.1 NC_007605.1 + 61163 0.71 0.566757
Target:  5'- uGCCuCGACGucuguCCgCGggGCCGcCGCCAc -3'
miRNA:   3'- -UGGuGCUGUu----GGgGCuuCGGU-GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 61647 0.66 0.849499
Target:  5'- cACCGCGAgcggGACaCCCGggGCacagAgGCCAg -3'
miRNA:   3'- -UGGUGCUg---UUG-GGGCuuCGg---UgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 61742 0.67 0.781938
Target:  5'- cACCGCGA--GCCCCacGAGCCGCuucGCCc -3'
miRNA:   3'- -UGGUGCUguUGGGGc-UUCGGUG---CGGu -5'
33306 3' -58.1 NC_007605.1 + 61975 0.68 0.754259
Target:  5'- aGCCGCGACGGggggcguuugucCCCCGcuGGCCuccgcguacACGCCc -3'
miRNA:   3'- -UGGUGCUGUU------------GGGGCu-UCGG---------UGCGGu -5'
33306 3' -58.1 NC_007605.1 + 62154 0.66 0.841641
Target:  5'- gUCGCGGCuGugCCCGuccuGGCCuuugACGCCGc -3'
miRNA:   3'- uGGUGCUG-UugGGGCu---UCGG----UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 62392 0.69 0.706177
Target:  5'- gACCGCGAgCAccuCCCCGcuGCCcucuucgaugauGCGCCGg -3'
miRNA:   3'- -UGGUGCU-GUu--GGGGCuuCGG------------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 62545 0.71 0.586579
Target:  5'- gGCCGCcuccaGAUGGCCgaggCCGAAGCUGCGCCu -3'
miRNA:   3'- -UGGUG-----CUGUUGG----GGCUUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 62688 0.68 0.754259
Target:  5'- cCCACGACAGCCUCuccGGCCAccgacgaucCGCUg -3'
miRNA:   3'- uGGUGCUGUUGGGGcu-UCGGU---------GCGGu -5'
33306 3' -58.1 NC_007605.1 + 62954 0.69 0.696346
Target:  5'- uGCUGCugucugggGACGACCCCGcuGCC-CGCCu -3'
miRNA:   3'- -UGGUG--------CUGUUGGGGCuuCGGuGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.