miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 171713 0.68 0.754259
Target:  5'- cCCACGG--GCCCCuuGGUCACGCUu -3'
miRNA:   3'- uGGUGCUguUGGGGcuUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 171657 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 171382 0.71 0.596541
Target:  5'- cACCGCccGCAGcCCCCGGAGCC-CGCgGa -3'
miRNA:   3'- -UGGUGc-UGUU-GGGGCUUCGGuGCGgU- -5'
33306 3' -58.1 NC_007605.1 + 171378 0.69 0.675544
Target:  5'- gGCgGgGACAgagaggcggucgcGCCCCc-GGCCGCGCCAg -3'
miRNA:   3'- -UGgUgCUGU-------------UGGGGcuUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 171355 0.66 0.841641
Target:  5'- gACCcCGACc-CCCCGccGCC-CGCCc -3'
miRNA:   3'- -UGGuGCUGuuGGGGCuuCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 171304 0.66 0.864639
Target:  5'- -gCugGGgGGCCgCGGgggaaGGCCACGCCc -3'
miRNA:   3'- ugGugCUgUUGGgGCU-----UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 171175 0.68 0.754259
Target:  5'- cCCACGG--GCCCCuuGGUCACGCUu -3'
miRNA:   3'- uGGUGCUguUGGGGcuUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 171119 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 170844 0.67 0.790919
Target:  5'- cACCGCccGCAGCCCCcGGGCC-CGCgGa -3'
miRNA:   3'- -UGGUGc-UGUUGGGGcUUCGGuGCGgU- -5'
33306 3' -58.1 NC_007605.1 + 170840 0.69 0.675544
Target:  5'- gGCgGgGACAgagaggcggucgcGCCCCc-GGCCGCGCCAg -3'
miRNA:   3'- -UGgUgCUGU-------------UGGGGcuUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 170818 0.66 0.841641
Target:  5'- gACCcCGACc-CCCCGccGCC-CGCCc -3'
miRNA:   3'- -UGGuGCUGuuGGGGCuuCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 170767 0.66 0.864639
Target:  5'- -gCugGGgGGCCgCGGgggaaGGCCACGCCc -3'
miRNA:   3'- ugGugCUgUUGGgGCU-----UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 170653 0.68 0.754259
Target:  5'- cCCACGG--GCCCCuuGGUCACGCUu -3'
miRNA:   3'- uGGUGCUguUGGGGcuUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 170597 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 170322 0.71 0.596541
Target:  5'- cACCGCccGCAGcCCCCGGAGCC-CGCgGa -3'
miRNA:   3'- -UGGUGc-UGUU-GGGGCUUCGGuGCGgU- -5'
33306 3' -58.1 NC_007605.1 + 170318 0.69 0.675544
Target:  5'- gGCgGgGACAgagaggcggucgcGCCCCc-GGCCGCGCCAg -3'
miRNA:   3'- -UGgUgCUGU-------------UGGGGcuUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 170295 0.66 0.841641
Target:  5'- gACCcCGACc-CCCCGccGCC-CGCCc -3'
miRNA:   3'- -UGGuGCUGuuGGGGCuuCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 170244 0.66 0.864639
Target:  5'- -gCugGGgGGCCgCGGgggaaGGCCACGCCc -3'
miRNA:   3'- ugGugCUgUUGGgGCU-----UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 170115 0.68 0.754259
Target:  5'- cCCACGG--GCCCCuuGGUCACGCUu -3'
miRNA:   3'- uGGUGCUguUGGGGcuUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 170059 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.