miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 169785 0.71 0.596541
Target:  5'- cACCGCccGCAGcCCCCGGAGCC-CGCgGa -3'
miRNA:   3'- -UGGUGc-UGUU-GGGGCUUCGGuGCGgU- -5'
33306 3' -58.1 NC_007605.1 + 169780 0.69 0.675544
Target:  5'- gGCgGgGACAgagaggcggucgcGCCCCc-GGCCGCGCCAg -3'
miRNA:   3'- -UGgUgCUGU-------------UGGGGcuUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 169758 0.66 0.841641
Target:  5'- gACCcCGACc-CCCCGccGCC-CGCCc -3'
miRNA:   3'- -UGGuGCUGuuGGGGCuuCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 169707 0.66 0.864639
Target:  5'- -gCugGGgGGCCgCGGgggaaGGCCACGCCc -3'
miRNA:   3'- ugGugCUgUUGGgGCU-----UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 166948 0.67 0.799762
Target:  5'- aGCCACcccuGCCCCGAGGaCCcagACGUCAg -3'
miRNA:   3'- -UGGUGcuguUGGGGCUUC-GG---UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 162536 0.66 0.844807
Target:  5'- uACCACGugaugcaguacucguGCAACCCCuuugcgcAGCC-CGCCu -3'
miRNA:   3'- -UGGUGC---------------UGUUGGGGcu-----UCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 162407 0.76 0.301992
Target:  5'- --aAUGACAACCCCG-GGCUugGCCAg -3'
miRNA:   3'- uggUGCUGUUGGGGCuUCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 162251 0.66 0.849499
Target:  5'- gACCugGACGcgGCCCUGcaGGGCCGgGUg- -3'
miRNA:   3'- -UGGugCUGU--UGGGGC--UUCGGUgCGgu -5'
33306 3' -58.1 NC_007605.1 + 162037 0.67 0.77283
Target:  5'- aGCCGcCGGCcguacacccGGCCCUGcaGGGCCGCGuCCAg -3'
miRNA:   3'- -UGGU-GCUG---------UUGGGGC--UUCGGUGC-GGU- -5'
33306 3' -58.1 NC_007605.1 + 160904 0.69 0.715948
Target:  5'- uCCugGGCuGCCCCGGGcCCACcCCAc -3'
miRNA:   3'- uGGugCUGuUGGGGCUUcGGUGcGGU- -5'
33306 3' -58.1 NC_007605.1 + 160858 0.66 0.833602
Target:  5'- gGCCuGCGACGcgguGCUgaCCGGcucGGCCACGCUg -3'
miRNA:   3'- -UGG-UGCUGU----UGG--GGCU---UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 160853 0.66 0.857166
Target:  5'- cACC-CGGCGGacCCCCGGAGUCugGaCGu -3'
miRNA:   3'- -UGGuGCUGUU--GGGGCUUCGGugCgGU- -5'
33306 3' -58.1 NC_007605.1 + 160792 0.68 0.762671
Target:  5'- gGCCA-GACGGcgcuugcgucugcCCCCGGAGCCcUGCCc -3'
miRNA:   3'- -UGGUgCUGUU-------------GGGGCUUCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 160727 0.72 0.48966
Target:  5'- cGCCGCcaGCAGCCCCGAcaucGCCGCcCCAg -3'
miRNA:   3'- -UGGUGc-UGUUGGGGCUu---CGGUGcGGU- -5'
33306 3' -58.1 NC_007605.1 + 160650 0.66 0.864639
Target:  5'- aGCCACGuccaGACUCCGggGguCCA-GCCGg -3'
miRNA:   3'- -UGGUGCug--UUGGGGCuuC--GGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 160367 0.72 0.499052
Target:  5'- aACCACGGCAACCCUuccacggcaGAGGggacCCACGUCu -3'
miRNA:   3'- -UGGUGCUGUUGGGG---------CUUC----GGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 159993 0.7 0.616532
Target:  5'- uGCCucCGGCcGCCCCGGgcccgGGaCCGCGCCc -3'
miRNA:   3'- -UGGu-GCUGuUGGGGCU-----UC-GGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 159921 0.66 0.841641
Target:  5'- cGCCGUGGC--UCCCGggGCCACGg-- -3'
miRNA:   3'- -UGGUGCUGuuGGGGCuuCGGUGCggu -5'
33306 3' -58.1 NC_007605.1 + 159721 0.7 0.626548
Target:  5'- aGCCGCucCGugGCCCCgGGAGCCACGgCGu -3'
miRNA:   3'- -UGGUGcuGU--UGGGG-CUUCGGUGCgGU- -5'
33306 3' -58.1 NC_007605.1 + 159618 0.67 0.799762
Target:  5'- cGCCAgGugG-CCaCCGAgGGUCugGCCAa -3'
miRNA:   3'- -UGGUgCugUuGG-GGCU-UCGGugCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.