miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 159023 0.7 0.656591
Target:  5'- -aCGCGGuCAGCCCCGGccaGGCCcUGCCc -3'
miRNA:   3'- ugGUGCU-GUUGGGGCU---UCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 158782 0.67 0.799762
Target:  5'- cACCACGguGCAGCCUacc-GCCACGCg- -3'
miRNA:   3'- -UGGUGC--UGUUGGGgcuuCGGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 158406 0.67 0.794473
Target:  5'- gACCGCGACggaguuaacaucaccGucaaccuaaaGCCCaccgGggGCCugGCCAa -3'
miRNA:   3'- -UGGUGCUG---------------U----------UGGGg---CuuCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 158340 0.68 0.744814
Target:  5'- cGCUACGcCAGCCagaCGGAGCUcuaugACGCCc -3'
miRNA:   3'- -UGGUGCuGUUGGg--GCUUCGG-----UGCGGu -5'
33306 3' -58.1 NC_007605.1 + 158166 0.7 0.656591
Target:  5'- --aGCGGCGcACCCCGuuGGCCAgGCCc -3'
miRNA:   3'- uggUGCUGU-UGGGGCu-UCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 158161 0.7 0.656591
Target:  5'- gGCguaGCGGCGcACCCCGuuGGCCAgGCCc -3'
miRNA:   3'- -UGg--UGCUGU-UGGGGCu-UCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 158097 0.67 0.790919
Target:  5'- gACUACGACAACcgagggacgaaCCCGcaAGGCgaACGCCGa -3'
miRNA:   3'- -UGGUGCUGUUG-----------GGGC--UUCGg-UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 155649 0.69 0.706177
Target:  5'- uCCACGuccaGACCCUGAGGC-GCGCUg -3'
miRNA:   3'- uGGUGCug--UUGGGGCUUCGgUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 154631 0.66 0.864639
Target:  5'- gACCGgGACGGCUaCCagGggGCCAcCGUCAu -3'
miRNA:   3'- -UGGUgCUGUUGG-GG--CuuCGGU-GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 154330 0.7 0.616532
Target:  5'- aGCUGCuGGCGGCCUgCGAGGauCCGCGCCAa -3'
miRNA:   3'- -UGGUG-CUGUUGGG-GCUUC--GGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 154149 0.68 0.754259
Target:  5'- gGCCuuCGugGagGCCCUG-AGCCcCGCCAa -3'
miRNA:   3'- -UGGu-GCugU--UGGGGCuUCGGuGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 154092 0.68 0.724683
Target:  5'- cGCCugGGCGccccucaACCCCGAgGGCCA-GCUu -3'
miRNA:   3'- -UGGugCUGU-------UGGGGCU-UCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 153211 0.66 0.857166
Target:  5'- gGCCACGGgAACgCCGu-GCCGCucggcguagGCCGg -3'
miRNA:   3'- -UGGUGCUgUUGgGGCuuCGGUG---------CGGU- -5'
33306 3' -58.1 NC_007605.1 + 152455 0.69 0.686464
Target:  5'- cCCACgGugGACCCgGggGCCAUGgUg -3'
miRNA:   3'- uGGUG-CugUUGGGgCuuCGGUGCgGu -5'
33306 3' -58.1 NC_007605.1 + 151394 0.7 0.636568
Target:  5'- gGCCACGGCcagGGCCUCGuAGGCCGagacgggcaGCCGg -3'
miRNA:   3'- -UGGUGCUG---UUGGGGC-UUCGGUg--------CGGU- -5'
33306 3' -58.1 NC_007605.1 + 150745 0.76 0.330289
Target:  5'- gACCACGuccCGuguCCcagCCGAGGCCGCGCCAg -3'
miRNA:   3'- -UGGUGCu--GUu--GG---GGCUUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 150738 0.67 0.773746
Target:  5'- uGCCugGACGcuauucccccuccaCCCGGAGCacgACGCCGu -3'
miRNA:   3'- -UGGugCUGUug------------GGGCUUCGg--UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 150688 0.68 0.754259
Target:  5'- uCCAgGugcACGACCCgGAGGCUGCGUCu -3'
miRNA:   3'- uGGUgC---UGUUGGGgCUUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 150349 0.68 0.754259
Target:  5'- gGCCAUGGCcgaagcuuACCCCGGAGgagcCCAUGCa- -3'
miRNA:   3'- -UGGUGCUGu-------UGGGGCUUC----GGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 146397 0.72 0.508523
Target:  5'- gGCCaguACGGCcACCCCuguGCCACGCCc -3'
miRNA:   3'- -UGG---UGCUGuUGGGGcuuCGGUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.