miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 141413 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 141311 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 141209 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 141107 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 141005 0.66 0.857166
Target:  5'- uCCAgGGCcggAACCCCGGacccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU----UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 140903 0.68 0.744814
Target:  5'- uCCAgGGCcggAACCCCGAcccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU---UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 137706 0.7 0.646585
Target:  5'- aAUUGCaGugGACCCCGGAGCCACaCUg -3'
miRNA:   3'- -UGGUG-CugUUGGGGCUUCGGUGcGGu -5'
33306 3' -58.1 NC_007605.1 + 136393 0.67 0.77283
Target:  5'- aACCugGACAacaaACCgCCGAGGCagacccCGCUAc -3'
miRNA:   3'- -UGGugCUGU----UGG-GGCUUCGgu----GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 136203 0.66 0.864639
Target:  5'- gGCCAgCGAC-GCCCCGGAcCUACaaaaGCCGg -3'
miRNA:   3'- -UGGU-GCUGuUGGGGCUUcGGUG----CGGU- -5'
33306 3' -58.1 NC_007605.1 + 136141 0.66 0.833602
Target:  5'- uACCguaGACuGCCgUGguGCCGCGCCGa -3'
miRNA:   3'- -UGGug-CUGuUGGgGCuuCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 135033 0.66 0.857166
Target:  5'- gACUACGAgGGCCUCu--GgCACGCCGu -3'
miRNA:   3'- -UGGUGCUgUUGGGGcuuCgGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 134833 0.7 0.616532
Target:  5'- gGCCACGGCGugCCaGAGGCCcucguagucguGCGCa- -3'
miRNA:   3'- -UGGUGCUGUugGGgCUUCGG-----------UGCGgu -5'
33306 3' -58.1 NC_007605.1 + 133985 0.68 0.735275
Target:  5'- gGCCGCGcugaACGugCCCGggGCgGCGg-- -3'
miRNA:   3'- -UGGUGC----UGUugGGGCuuCGgUGCggu -5'
33306 3' -58.1 NC_007605.1 + 133869 0.69 0.666578
Target:  5'- gAUCAgGGCAGCCUgGAGGUCugGCa- -3'
miRNA:   3'- -UGGUgCUGUUGGGgCUUCGGugCGgu -5'
33306 3' -58.1 NC_007605.1 + 133191 0.69 0.706177
Target:  5'- uAUCAaGACGugCCCGGAGa-GCGCCAu -3'
miRNA:   3'- -UGGUgCUGUugGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 132247 0.66 0.833602
Target:  5'- aGCCuACuGCcccuACCCCGAAGCCccguaGCCGg -3'
miRNA:   3'- -UGG-UGcUGu---UGGGGCUUCGGug---CGGU- -5'
33306 3' -58.1 NC_007605.1 + 130027 0.73 0.452963
Target:  5'- cACCAUGACAGCCgCC--AGCUACGCUc -3'
miRNA:   3'- -UGGUGCUGUUGG-GGcuUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 129859 0.67 0.790919
Target:  5'- gGCUGCGugGACCuCCGcuGgUugGCCAa -3'
miRNA:   3'- -UGGUGCugUUGG-GGCuuCgGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 124945 0.68 0.744814
Target:  5'- aGCUAUGAaaCAACCCCucAGCCGCugacuGCCGc -3'
miRNA:   3'- -UGGUGCU--GUUGGGGcuUCGGUG-----CGGU- -5'
33306 3' -58.1 NC_007605.1 + 123359 0.66 0.849499
Target:  5'- aGCCgguGC-ACAGCCCUGu-GCCugGCCc -3'
miRNA:   3'- -UGG---UGcUGUUGGGGCuuCGGugCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.