miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 60757 0.71 0.576649
Target:  5'- --gACGACAGCCCCcaGggGCCccCGCCc -3'
miRNA:   3'- uggUGCUGUUGGGG--CuuCGGu-GCGGu -5'
33306 3' -58.1 NC_007605.1 + 160727 0.72 0.48966
Target:  5'- cGCCGCcaGCAGCCCCGAcaucGCCGCcCCAg -3'
miRNA:   3'- -UGGUGc-UGUUGGGGCUu---CGGUGcGGU- -5'
33306 3' -58.1 NC_007605.1 + 64463 0.72 0.499052
Target:  5'- cUCAgGGCAGCCCUGcagcGGGCCAgGCCGg -3'
miRNA:   3'- uGGUgCUGUUGGGGC----UUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 146397 0.72 0.508523
Target:  5'- gGCCaguACGGCcACCCCuguGCCACGCCc -3'
miRNA:   3'- -UGG---UGCUGuUGGGGcuuCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 105072 0.72 0.518069
Target:  5'- -gUugGGCaAACCCCgGggGCCGCGCUc -3'
miRNA:   3'- ugGugCUG-UUGGGG-CuuCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 53844 0.72 0.527686
Target:  5'- gGCCAgGGCGGCCUCGAggggAGCCugGaCAg -3'
miRNA:   3'- -UGGUgCUGUUGGGGCU----UCGGugCgGU- -5'
33306 3' -58.1 NC_007605.1 + 80618 0.72 0.527686
Target:  5'- uGCCGCGAUGuacCCCCGggGau-CGCCAg -3'
miRNA:   3'- -UGGUGCUGUu--GGGGCuuCgguGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 61163 0.71 0.566757
Target:  5'- uGCCuCGACGucuguCCgCGggGCCGcCGCCAc -3'
miRNA:   3'- -UGGuGCUGUu----GGgGCuuCGGU-GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 99141 0.71 0.575659
Target:  5'- gACCACGcacccggGCAcCUCCGAGGCCgccggcucccGCGCCGg -3'
miRNA:   3'- -UGGUGC-------UGUuGGGGCUUCGG----------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 92303 0.73 0.452963
Target:  5'- gGCCAUGAUGGCCgCGcGGuCCACGCCc -3'
miRNA:   3'- -UGGUGCUGUUGGgGCuUC-GGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 2672 0.74 0.392571
Target:  5'- gACCGCcacCGGCCCCGGAGCagAUGCCAg -3'
miRNA:   3'- -UGGUGcu-GUUGGGGCUUCGg-UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 33660 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 150745 0.76 0.330289
Target:  5'- gACCACGuccCGuguCCcagCCGAGGCCGCGCCAg -3'
miRNA:   3'- -UGGUGCu--GUu--GG---GGCUUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 12177 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 15246 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 18315 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 21384 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 24453 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 27522 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 30591 0.76 0.337662
Target:  5'- gGCCACG-C-ACCCCG-GGCCAgGCCAc -3'
miRNA:   3'- -UGGUGCuGuUGGGGCuUCGGUgCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.