miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 99141 0.71 0.575659
Target:  5'- gACCACGcacccggGCAcCUCCGAGGCCgccggcucccGCGCCGg -3'
miRNA:   3'- -UGGUGC-------UGUuGGGGCUUCGG----------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 60757 0.71 0.576649
Target:  5'- --gACGACAGCCCCcaGggGCCccCGCCc -3'
miRNA:   3'- uggUGCUGUUGGGG--CuuCGGu-GCGGu -5'
33306 3' -58.1 NC_007605.1 + 63356 0.7 0.606527
Target:  5'- uGCUguACGACAGCCCCGcAAcCCugGCUg -3'
miRNA:   3'- -UGG--UGCUGUUGGGGC-UUcGGugCGGu -5'
33306 3' -58.1 NC_007605.1 + 120414 0.7 0.616532
Target:  5'- -gCAUGACAACCCgGGAGUaCACGUUAa -3'
miRNA:   3'- ugGUGCUGUUGGGgCUUCG-GUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 134833 0.7 0.616532
Target:  5'- gGCCACGGCGugCCaGAGGCCcucguagucguGCGCa- -3'
miRNA:   3'- -UGGUGCUGUugGGgCUUCGG-----------UGCGgu -5'
33306 3' -58.1 NC_007605.1 + 159993 0.7 0.616532
Target:  5'- uGCCucCGGCcGCCCCGGgcccgGGaCCGCGCCc -3'
miRNA:   3'- -UGGu-GCUGuUGGGGCU-----UC-GGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 12388 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 15457 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 18526 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 21595 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 34244 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 31175 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 2732 0.71 0.576649
Target:  5'- gACCAgGGCGGCggCUGAAuGCCAUGCCAa -3'
miRNA:   3'- -UGGUgCUGUUGg-GGCUU-CGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 62545 0.71 0.586579
Target:  5'- gGCCGCcuccaGAUGGCCgaggCCGAAGCUGCGCCu -3'
miRNA:   3'- -UGGUG-----CUGUUGG----GGCUUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 12762 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 15831 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 18900 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 21968 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 25037 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 28106 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.