miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 33871 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 159721 0.7 0.626548
Target:  5'- aGCCGCucCGugGCCCCgGGAGCCACGgCGu -3'
miRNA:   3'- -UGGUGcuGU--UGGGG-CUUCGGUGCgGU- -5'
33306 3' -58.1 NC_007605.1 + 151394 0.7 0.636568
Target:  5'- gGCCACGGCcagGGCCUCGuAGGCCGagacgggcaGCCGg -3'
miRNA:   3'- -UGGUGCUG---UUGGGGC-UUCGGUg--------CGGU- -5'
33306 3' -58.1 NC_007605.1 + 45090 0.7 0.646585
Target:  5'- uCCGgGugGGCCCCGAGGCUcuCGCa- -3'
miRNA:   3'- uGGUgCugUUGGGGCUUCGGu-GCGgu -5'
33306 3' -58.1 NC_007605.1 + 137706 0.7 0.646585
Target:  5'- aAUUGCaGugGACCCCGGAGCCACaCUg -3'
miRNA:   3'- -UGGUG-CugUUGGGGCUUCGGUGcGGu -5'
33306 3' -58.1 NC_007605.1 + 158166 0.7 0.656591
Target:  5'- --aGCGGCGcACCCCGuuGGCCAgGCCc -3'
miRNA:   3'- uggUGCUGU-UGGGGCu-UCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 143260 0.69 0.666578
Target:  5'- gUCugGACGACgCUGGcgAGCCGgGCCAg -3'
miRNA:   3'- uGGugCUGUUGgGGCU--UCGGUgCGGU- -5'
33306 3' -58.1 NC_007605.1 + 21595 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 18526 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 15457 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 25037 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 28106 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 31175 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 34244 0.71 0.596541
Target:  5'- cGCCugGcGCcuCCUCGggGCCAgcCGCCGg -3'
miRNA:   3'- -UGGugC-UGuuGGGGCuuCGGU--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 63356 0.7 0.606527
Target:  5'- uGCUguACGACAGCCCCGcAAcCCugGCUg -3'
miRNA:   3'- -UGG--UGCUGUUGGGGC-UUcGGugCGGu -5'
33306 3' -58.1 NC_007605.1 + 120414 0.7 0.616532
Target:  5'- -gCAUGACAACCCgGGAGUaCACGUUAa -3'
miRNA:   3'- ugGUGCUGUUGGGgCUUCG-GUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 134833 0.7 0.616532
Target:  5'- gGCCACGGCGugCCaGAGGCCcucguagucguGCGCa- -3'
miRNA:   3'- -UGGUGCUGUugGGgCUUCGG-----------UGCGgu -5'
33306 3' -58.1 NC_007605.1 + 159993 0.7 0.616532
Target:  5'- uGCCucCGGCcGCCCCGGgcccgGGaCCGCGCCc -3'
miRNA:   3'- -UGGu-GCUGuUGGGGCU-----UC-GGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 12388 0.7 0.616532
Target:  5'- gGCCcccCGGCAgcugGCCCCGAGGagGCGCCc -3'
miRNA:   3'- -UGGu--GCUGU----UGGGGCUUCggUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 169780 0.69 0.675544
Target:  5'- gGCgGgGACAgagaggcggucgcGCCCCc-GGCCGCGCCAg -3'
miRNA:   3'- -UGgUgCUGU-------------UGGGGcuUCGGUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.