miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 55890 1.07 0.002666
Target:  5'- aACCACGACAACCCCGAAGCCACGCCAc -3'
miRNA:   3'- -UGGUGCUGUUGGGGCUUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 170059 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 91938 0.72 0.502831
Target:  5'- gGCCAgGGCcgaGGCCCCGcgccugcgggccccaAAGUCGCGCCGg -3'
miRNA:   3'- -UGGUgCUG---UUGGGGC---------------UUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 154631 0.66 0.864639
Target:  5'- gACCGgGACGGCUaCCagGggGCCAcCGUCAu -3'
miRNA:   3'- -UGGUgCUGUUGG-GG--CuuCGGU-GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 28311 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 25242 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 19105 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 16036 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 45288 0.74 0.40004
Target:  5'- uCUGCGAgAGCCUCGggGCCcacccggACGCCAa -3'
miRNA:   3'- uGGUGCUgUUGGGGCuuCGG-------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 170597 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 5501 0.73 0.47113
Target:  5'- --gACG-CAGCCCCgGAGGCCACGCa- -3'
miRNA:   3'- uggUGCuGUUGGGG-CUUCGGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 49784 0.75 0.384379
Target:  5'- gGCgGCGGCAGucgcCCCCGAAGUCGCgGCCc -3'
miRNA:   3'- -UGgUGCUGUU----GGGGCUUCGGUG-CGGu -5'
33306 3' -58.1 NC_007605.1 + 162407 0.76 0.301992
Target:  5'- --aAUGACAACCCCG-GGCUugGCCAg -3'
miRNA:   3'- uggUGCUGUUGGGGCuUCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 171657 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 34449 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 12967 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 171119 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 160367 0.72 0.499052
Target:  5'- aACCACGGCAACCCUuccacggcaGAGGggacCCACGUCu -3'
miRNA:   3'- -UGGUGCUGUUGGGG---------CUUC----GGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 31380 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 22173 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.