Results 21 - 40 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33306 | 3' | -58.1 | NC_007605.1 | + | 60483 | 0.72 | 0.508523 |
Target: 5'- cGCCAgGugGGCCCU--GGCCACgGCCGa -3' miRNA: 3'- -UGGUgCugUUGGGGcuUCGGUG-CGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 91938 | 0.72 | 0.502831 |
Target: 5'- gGCCAgGGCcgaGGCCCCGcgccugcgggccccaAAGUCGCGCCGg -3' miRNA: 3'- -UGGUgCUG---UUGGGGC---------------UUCGGUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 49784 | 0.75 | 0.384379 |
Target: 5'- gGCgGCGGCAGucgcCCCCGAAGUCGCgGCCc -3' miRNA: 3'- -UGgUGCUGUU----GGGGCUUCGGUG-CGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 31380 | 0.75 | 0.352765 |
Target: 5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3' miRNA: 3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 28040 | 0.7 | 0.646585 |
Target: 5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3' miRNA: 3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 101224 | 0.71 | 0.586579 |
Target: 5'- uCCugGuggGCAACCCCaGGGCCGCGaCCu -3' miRNA: 3'- uGGugC---UGUUGGGGcUUCGGUGC-GGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 170059 | 0.73 | 0.480352 |
Target: 5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3' miRNA: 3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 34449 | 0.75 | 0.352765 |
Target: 5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3' miRNA: 3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 92294 | 0.71 | 0.556909 |
Target: 5'- gAUUAaGACAcuGCCCCGGgccuccuacuccAGCCACGCCGg -3' miRNA: 3'- -UGGUgCUGU--UGGGGCU------------UCGGUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 162407 | 0.76 | 0.301992 |
Target: 5'- --aAUGACAACCCCG-GGCUugGCCAg -3' miRNA: 3'- uggUGCUGUUGGGGCuUCGGugCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 160367 | 0.72 | 0.499052 |
Target: 5'- aACCACGGCAACCCUuccacggcaGAGGggacCCACGUCu -3' miRNA: 3'- -UGGUGCUGUUGGGG---------CUUC----GGUGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 92047 | 0.72 | 0.508523 |
Target: 5'- aGCC-CGACcauGCCCCuGAAGCCcggugcccaaaGCGCCGa -3' miRNA: 3'- -UGGuGCUGu--UGGGG-CUUCGG-----------UGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 171657 | 0.73 | 0.480352 |
Target: 5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3' miRNA: 3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 45288 | 0.74 | 0.40004 |
Target: 5'- uCUGCGAgAGCCUCGggGCCcacccggACGCCAa -3' miRNA: 3'- uGGUGCUgUUGGGGCuuCGG-------UGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 19105 | 0.75 | 0.352765 |
Target: 5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3' miRNA: 3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 28311 | 0.75 | 0.352765 |
Target: 5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3' miRNA: 3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 15764 | 0.7 | 0.646585 |
Target: 5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3' miRNA: 3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 24971 | 0.7 | 0.646585 |
Target: 5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3' miRNA: 3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 169785 | 0.71 | 0.596541 |
Target: 5'- cACCGCccGCAGcCCCCGGAGCC-CGCgGa -3' miRNA: 3'- -UGGUGc-UGUU-GGGGCUUCGGuGCGgU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 40436 | 0.71 | 0.586579 |
Target: 5'- gGCCGCGGCugcccccugGACCCCuAGGCCuguGCCAu -3' miRNA: 3'- -UGGUGCUG---------UUGGGGcUUCGGug-CGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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