miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 24971 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 159023 0.7 0.656591
Target:  5'- -aCGCGGuCAGCCCCGGccaGGCCcUGCCc -3'
miRNA:   3'- ugGUGCU-GUUGGGGCU---UCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 25242 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 16036 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 130027 0.73 0.452963
Target:  5'- cACCAUGACAGCCgCC--AGCUACGCUc -3'
miRNA:   3'- -UGGUGCUGUUGG-GGcuUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 171119 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 104876 0.72 0.505674
Target:  5'- uCCGCGACcugacccggagacuGGCCCCcGGGCgGCGCCGa -3'
miRNA:   3'- uGGUGCUG--------------UUGGGGcUUCGgUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 92047 0.72 0.508523
Target:  5'- aGCC-CGACcauGCCCCuGAAGCCcggugcccaaaGCGCCGa -3'
miRNA:   3'- -UGGuGCUGu--UGGGG-CUUCGG-----------UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 101224 0.71 0.586579
Target:  5'- uCCugGuggGCAACCCCaGGGCCGCGaCCu -3'
miRNA:   3'- uGGugC---UGUUGGGGcUUCGGUGC-GGu -5'
33306 3' -58.1 NC_007605.1 + 170322 0.71 0.596541
Target:  5'- cACCGCccGCAGcCCCCGGAGCC-CGCgGa -3'
miRNA:   3'- -UGGUGc-UGUU-GGGGCUUCGGuGCGgU- -5'
33306 3' -58.1 NC_007605.1 + 61742 0.67 0.781938
Target:  5'- cACCGCGA--GCCCCacGAGCCGCuucGCCc -3'
miRNA:   3'- -UGGUGCUguUGGGGc-UUCGGUG---CGGu -5'
33306 3' -58.1 NC_007605.1 + 72969 0.67 0.781938
Target:  5'- uUCGCGuCAucACCCCccuaccuaGAGGCCAUGCUAu -3'
miRNA:   3'- uGGUGCuGU--UGGGG--------CUUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 55985 0.69 0.696346
Target:  5'- uCCugGACGACaUCGAggcaauguugGGCCugGCCGg -3'
miRNA:   3'- uGGugCUGUUGgGGCU----------UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 28815 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 3871 0.69 0.702252
Target:  5'- cGCCAgCGGCAgguccaggggaccuACCCCGGGcugcuguGCCACGCg- -3'
miRNA:   3'- -UGGU-GCUGU--------------UGGGGCUU-------CGGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 154092 0.68 0.724683
Target:  5'- cGCCugGGCGccccucaACCCCGAgGGCCA-GCUu -3'
miRNA:   3'- -UGGugCUGU-------UGGGGCU-UCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 66474 0.68 0.744814
Target:  5'- cCCGCGGCA---CCGAcagAGCCGCGCUg -3'
miRNA:   3'- uGGUGCUGUuggGGCU---UCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 171713 0.68 0.754259
Target:  5'- cCCACGG--GCCCCuuGGUCACGCUu -3'
miRNA:   3'- uGGUGCUguUGGGGcuUCGGUGCGGu -5'
33306 3' -58.1 NC_007605.1 + 150349 0.68 0.754259
Target:  5'- gGCCAUGGCcgaagcuuACCCCGGAGgagcCCAUGCa- -3'
miRNA:   3'- -UGGUGCUGu-------UGGGGCUUC----GGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 50586 0.68 0.754259
Target:  5'- gGCCACGGgGGCgCUGGcGGCCGgCGCCc -3'
miRNA:   3'- -UGGUGCUgUUGgGGCU-UCGGU-GCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.