Results 81 - 100 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33306 | 3' | -58.1 | NC_007605.1 | + | 31884 | 0.69 | 0.696346 |
Target: 5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3' miRNA: 3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 16539 | 0.69 | 0.696346 |
Target: 5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3' miRNA: 3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 133191 | 0.69 | 0.706177 |
Target: 5'- uAUCAaGACGugCCCGGAGa-GCGCCAu -3' miRNA: 3'- -UGGUgCUGUugGGGCUUCggUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 158340 | 0.68 | 0.744814 |
Target: 5'- cGCUACGcCAGCCagaCGGAGCUcuaugACGCCc -3' miRNA: 3'- -UGGUGCuGUUGGg--GCUUCGG-----UGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 88023 | 0.68 | 0.753319 |
Target: 5'- cCCGCGGCAggagGCCCCGcggcaggAGGCCcGCGgCAg -3' miRNA: 3'- uGGUGCUGU----UGGGGC-------UUCGG-UGCgGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 150349 | 0.68 | 0.754259 |
Target: 5'- gGCCAUGGCcgaagcuuACCCCGGAGgagcCCAUGCa- -3' miRNA: 3'- -UGGUGCUGu-------UGGGGCUUC----GGUGCGgu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 50586 | 0.68 | 0.754259 |
Target: 5'- gGCCACGGgGGCgCUGGcGGCCGgCGCCc -3' miRNA: 3'- -UGGUGCUgUUGgGGCU-UCGGU-GCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 170322 | 0.71 | 0.596541 |
Target: 5'- cACCGCccGCAGcCCCCGGAGCC-CGCgGa -3' miRNA: 3'- -UGGUGc-UGUU-GGGGCUUCGGuGCGgU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 101224 | 0.71 | 0.586579 |
Target: 5'- uCCugGuggGCAACCCCaGGGCCGCGaCCu -3' miRNA: 3'- uGGugC---UGUUGGGGcUUCGGUGC-GGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 92047 | 0.72 | 0.508523 |
Target: 5'- aGCC-CGACcauGCCCCuGAAGCCcggugcccaaaGCGCCGa -3' miRNA: 3'- -UGGuGCUGu--UGGGG-CUUCGG-----------UGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 54717 | 0.67 | 0.790919 |
Target: 5'- gGCC-CGcCAcCCCCGcGGCUAcCGCCAa -3' miRNA: 3'- -UGGuGCuGUuGGGGCuUCGGU-GCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 158782 | 0.67 | 0.799762 |
Target: 5'- cACCACGguGCAGCCUacc-GCCACGCg- -3' miRNA: 3'- -UGGUGC--UGUUGGGgcuuCGGUGCGgu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 91534 | 0.67 | 0.817004 |
Target: 5'- cCCuaACGcCAGCCCCGguGCCccaGCCAc -3' miRNA: 3'- uGG--UGCuGUUGGGGCuuCGGug-CGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 103733 | 0.66 | 0.825387 |
Target: 5'- uGCCAUGAUcuCCCCc-GGUCGCGCUc -3' miRNA: 3'- -UGGUGCUGuuGGGGcuUCGGUGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 136141 | 0.66 | 0.833602 |
Target: 5'- uACCguaGACuGCCgUGguGCCGCGCCGa -3' miRNA: 3'- -UGGug-CUGuUGGgGCuuCGGUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 25242 | 0.75 | 0.352765 |
Target: 5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3' miRNA: 3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 16036 | 0.75 | 0.352765 |
Target: 5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3' miRNA: 3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 130027 | 0.73 | 0.452963 |
Target: 5'- cACCAUGACAGCCgCC--AGCUACGCUc -3' miRNA: 3'- -UGGUGCUGUUGG-GGcuUCGGUGCGGu -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 171119 | 0.73 | 0.480352 |
Target: 5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3' miRNA: 3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5' |
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33306 | 3' | -58.1 | NC_007605.1 | + | 104876 | 0.72 | 0.505674 |
Target: 5'- uCCGCGACcugacccggagacuGGCCCCcGGGCgGCGCCGa -3' miRNA: 3'- uGGUGCUG--------------UUGGGGcUUCGgUGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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