miRNA display CGI


Results 101 - 120 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 3' -58.1 NC_007605.1 + 75067 0.66 0.825387
Target:  5'- gACUgaGCGcACGGCCUC-AAGCUugGCCAc -3'
miRNA:   3'- -UGG--UGC-UGUUGGGGcUUCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 51147 0.66 0.833602
Target:  5'- cACCAuCGACuGCCUCGggGUCACa--- -3'
miRNA:   3'- -UGGU-GCUGuUGGGGCuuCGGUGcggu -5'
33306 3' -58.1 NC_007605.1 + 170818 0.66 0.841641
Target:  5'- gACCcCGACc-CCCCGccGCC-CGCCc -3'
miRNA:   3'- -UGGuGCUGuuGGGGCuuCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 104943 0.66 0.841641
Target:  5'- gACCaacuaGCGGCGAgaCCCGAggcagacaaGGCCcCGCCAu -3'
miRNA:   3'- -UGG-----UGCUGUUg-GGGCU---------UCGGuGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 52959 0.66 0.856408
Target:  5'- gACCugGcagACAACCCCauuguggccauGAcacuuuuAGCgCACGCCAg -3'
miRNA:   3'- -UGGugC---UGUUGGGG-----------CU-------UCG-GUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 140903 0.68 0.744814
Target:  5'- uCCAgGGCcggAACCCCGAcccGGCUGCaGCCGg -3'
miRNA:   3'- uGGUgCUG---UUGGGGCU---UCGGUG-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 71037 0.68 0.722747
Target:  5'- uACCACGGCGacuGCCCCuagcucccgcggaaGAcauccuccuGGCCuGCGCCAu -3'
miRNA:   3'- -UGGUGCUGU---UGGGG--------------CU---------UCGG-UGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 22173 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 12967 0.75 0.352765
Target:  5'- aACCcCGGCGgcugGCCCCGAGGagGCGCCAg -3'
miRNA:   3'- -UGGuGCUGU----UGGGGCUUCggUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 5501 0.73 0.47113
Target:  5'- --gACG-CAGCCCCgGAGGCCACGCa- -3'
miRNA:   3'- uggUGCuGUUGGGG-CUUCGGUGCGgu -5'
33306 3' -58.1 NC_007605.1 + 170597 0.73 0.480352
Target:  5'- uGCCGgGGuCAGCCCUGggGCCcuuCGUCAc -3'
miRNA:   3'- -UGGUgCU-GUUGGGGCuuCGGu--GCGGU- -5'
33306 3' -58.1 NC_007605.1 + 69725 0.72 0.508523
Target:  5'- cCCAgGuACAGCCCCccgGAGGCCAuCGCCc -3'
miRNA:   3'- uGGUgC-UGUUGGGG---CUUCGGU-GCGGu -5'
33306 3' -58.1 NC_007605.1 + 65375 0.72 0.527686
Target:  5'- uUCAUGGCcucGCCCUGcAGGUCGCGCCAa -3'
miRNA:   3'- uGGUGCUGu--UGGGGC-UUCGGUGCGGU- -5'
33306 3' -58.1 NC_007605.1 + 40436 0.71 0.586579
Target:  5'- gGCCGCGGCugcccccugGACCCCuAGGCCuguGCCAu -3'
miRNA:   3'- -UGGUGCUG---------UUGGGGcUUCGGug-CGGU- -5'
33306 3' -58.1 NC_007605.1 + 169785 0.71 0.596541
Target:  5'- cACCGCccGCAGcCCCCGGAGCC-CGCgGa -3'
miRNA:   3'- -UGGUGc-UGUU-GGGGCUUCGGuGCGgU- -5'
33306 3' -58.1 NC_007605.1 + 18833 0.7 0.646585
Target:  5'- cCCAgGGCcACCCggCGGAGCCAgGCCc -3'
miRNA:   3'- uGGUgCUGuUGGG--GCUUCGGUgCGGu -5'
33306 3' -58.1 NC_007605.1 + 159023 0.7 0.656591
Target:  5'- -aCGCGGuCAGCCCCGGccaGGCCcUGCCc -3'
miRNA:   3'- ugGUGCU-GUUGGGGCU---UCGGuGCGGu -5'
33306 3' -58.1 NC_007605.1 + 55985 0.69 0.696346
Target:  5'- uCCugGACGACaUCGAggcaauguugGGCCugGCCGg -3'
miRNA:   3'- uGGugCUGUUGgGGCU----------UCGGugCGGU- -5'
33306 3' -58.1 NC_007605.1 + 28815 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5'
33306 3' -58.1 NC_007605.1 + 13470 0.69 0.696346
Target:  5'- gGCCugGugGACCCgggGAGGCCAgaaGCUg -3'
miRNA:   3'- -UGGugCugUUGGGg--CUUCGGUg--CGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.