miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 5' -62.2 NC_007605.1 + 60405 0.66 0.692607
Target:  5'- gGGCAUCGCggaucacccccucugGGCCCaCACCAgcgagCCCCu- -3'
miRNA:   3'- -CUGUGGCG---------------CCGGGaGUGGUa----GGGGca -5'
33306 5' -62.2 NC_007605.1 + 50889 0.66 0.688758
Target:  5'- --aGCCGCggagauucGGCCCUcCGCCAcccgccUCCCCa- -3'
miRNA:   3'- cugUGGCG--------CCGGGA-GUGGU------AGGGGca -5'
33306 5' -62.2 NC_007605.1 + 60492 0.66 0.688758
Target:  5'- gGACGCCGCcgccaggugGGCCCUgGCCAcggCCGa -3'
miRNA:   3'- -CUGUGGCG---------CCGGGAgUGGUaggGGCa -5'
33306 5' -62.2 NC_007605.1 + 152915 0.66 0.688758
Target:  5'- aGACAgCCGCGGUUgUCAUCAUCaUCGg -3'
miRNA:   3'- -CUGU-GGCGCCGGgAGUGGUAGgGGCa -5'
33306 5' -62.2 NC_007605.1 + 87446 0.66 0.688758
Target:  5'- aGugACCGUGgaGCCCgccCACCcgaCCCCGg -3'
miRNA:   3'- -CugUGGCGC--CGGGa--GUGGua-GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 157636 0.66 0.679106
Target:  5'- -cCAuCCGCGGCCCgcgggagCACCcccgCCgCCGUu -3'
miRNA:   3'- cuGU-GGCGCCGGGa------GUGGua--GG-GGCA- -5'
33306 5' -62.2 NC_007605.1 + 53984 0.66 0.678139
Target:  5'- --uGCCGCcaucucgugGGCCUUCGCCAUCagggucuggcucuCCCGg -3'
miRNA:   3'- cugUGGCG---------CCGGGAGUGGUAG-------------GGGCa -5'
33306 5' -62.2 NC_007605.1 + 149466 0.66 0.669419
Target:  5'- -uUACCGCGGCguauggcguuuaCCggacaCACCuUCCCCGg -3'
miRNA:   3'- cuGUGGCGCCG------------GGa----GUGGuAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 61157 0.66 0.669419
Target:  5'- cGGCAgCGaccuGGCCCUC-CCuucCCCCGa -3'
miRNA:   3'- -CUGUgGCg---CCGGGAGuGGua-GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 48901 0.66 0.666507
Target:  5'- -uCACCGUGGCUCcCGCCucuuggaugccaucAUCCCCu- -3'
miRNA:   3'- cuGUGGCGCCGGGaGUGG--------------UAGGGGca -5'
33306 5' -62.2 NC_007605.1 + 40470 0.66 0.659704
Target:  5'- --gGCCGCGGUCCUC-----CCCCGUg -3'
miRNA:   3'- cugUGGCGCCGGGAGugguaGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 81485 0.66 0.659704
Target:  5'- uAUugUcCGGCCCUgggaGCCAUCCCUGa -3'
miRNA:   3'- cUGugGcGCCGGGAg---UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 122166 0.66 0.649969
Target:  5'- uGCAUgGUGGCagccaCUCGCgGgUCCCCGUa -3'
miRNA:   3'- cUGUGgCGCCGg----GAGUGgU-AGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 58324 0.66 0.649969
Target:  5'- aGCACCGgGcGUCCcCGCCGccUCCCCa- -3'
miRNA:   3'- cUGUGGCgC-CGGGaGUGGU--AGGGGca -5'
33306 5' -62.2 NC_007605.1 + 138864 0.66 0.640221
Target:  5'- aACuCCGCGGUCCUUAUCAguuuucUgCCCGUu -3'
miRNA:   3'- cUGuGGCGCCGGGAGUGGU------AgGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 147919 0.66 0.640221
Target:  5'- uGAC-CCGUGGgCCUUACC-UUCCUGg -3'
miRNA:   3'- -CUGuGGCGCCgGGAGUGGuAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 53253 0.66 0.640221
Target:  5'- aGACACCcagGaGCCgCUCAacuaCAUCCCCGUc -3'
miRNA:   3'- -CUGUGGcg-C-CGG-GAGUg---GUAGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 117467 0.67 0.630467
Target:  5'- uGCGUCGUGGCCCUCGUC-UCCUCGa -3'
miRNA:   3'- cUGUGGCGCCGGGAGUGGuAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 61743 0.67 0.630467
Target:  5'- -cCACCGCGaGCCCcacgaGCCGcuUCgCCCGUg -3'
miRNA:   3'- cuGUGGCGC-CGGGag---UGGU--AG-GGGCA- -5'
33306 5' -62.2 NC_007605.1 + 134665 0.67 0.620715
Target:  5'- uGACGCUG-GGCuaCCUgGCC-UCCCCGg -3'
miRNA:   3'- -CUGUGGCgCCG--GGAgUGGuAGGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.