miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 5' -62.2 NC_007605.1 + 105441 0.67 0.60124
Target:  5'- gGGCACuCGgGGgCCUCuacaccGCCGUCaCCCGg -3'
miRNA:   3'- -CUGUG-GCgCCgGGAG------UGGUAG-GGGCa -5'
33306 5' -62.2 NC_007605.1 + 110829 0.67 0.61097
Target:  5'- cGGCACUGCGGCCuCUU-CCAUucggacauuagCCCCa- -3'
miRNA:   3'- -CUGUGGCGCCGG-GAGuGGUA-----------GGGGca -5'
33306 5' -62.2 NC_007605.1 + 61743 0.67 0.630467
Target:  5'- -cCACCGCGaGCCCcacgaGCCGcuUCgCCCGUg -3'
miRNA:   3'- cuGUGGCGC-CGGGag---UGGU--AG-GGGCA- -5'
33306 5' -62.2 NC_007605.1 + 136331 0.67 0.61097
Target:  5'- -cCGCCGCGGgccaggaCCUCAUCAgcgucCCCCGc -3'
miRNA:   3'- cuGUGGCGCCg------GGAGUGGUa----GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 138587 0.67 0.61097
Target:  5'- -cCGCCGUGuCUggCUCACCAUCCCCc- -3'
miRNA:   3'- cuGUGGCGCcGG--GAGUGGUAGGGGca -5'
33306 5' -62.2 NC_007605.1 + 89801 0.67 0.60124
Target:  5'- uGGCAgCCGCGGCCaUCACCuggguaCCCa- -3'
miRNA:   3'- -CUGU-GGCGCCGGgAGUGGuag---GGGca -5'
33306 5' -62.2 NC_007605.1 + 91749 0.67 0.581848
Target:  5'- cGGgGCCuCGGCCCUgGCCucUUCCCGc -3'
miRNA:   3'- -CUgUGGcGCCGGGAgUGGu-AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 154121 0.68 0.534039
Target:  5'- aAC-CUGCaGGCCCUgGCCcccUCCCCGg -3'
miRNA:   3'- cUGuGGCG-CCGGGAgUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 104928 0.68 0.543502
Target:  5'- aGAC-CCGaggcagacaaGGCCC-CGCCAUCCCaCGa -3'
miRNA:   3'- -CUGuGGCg---------CCGGGaGUGGUAGGG-GCa -5'
33306 5' -62.2 NC_007605.1 + 13594 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 16663 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 19732 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 22801 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 25870 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 32007 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 22227 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 28365 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 31434 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 34503 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 25296 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.