Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33306 | 5' | -62.2 | NC_007605.1 | + | 25296 | 0.68 | 0.550159 |
Target: 5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3' miRNA: 3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 22227 | 0.68 | 0.550159 |
Target: 5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3' miRNA: 3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 19158 | 0.68 | 0.550159 |
Target: 5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3' miRNA: 3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 16089 | 0.68 | 0.550159 |
Target: 5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3' miRNA: 3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 13020 | 0.68 | 0.550159 |
Target: 5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3' miRNA: 3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 22801 | 0.68 | 0.524634 |
Target: 5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3' miRNA: 3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 50578 | 0.69 | 0.49682 |
Target: 5'- gGGCGCUgGCGGCCggCGcCCGUCCUCGg -3' miRNA: 3'- -CUGUGG-CGCCGGgaGU-GGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 58304 | 0.69 | 0.487695 |
Target: 5'- cGGCcuCCGCGGCCCcgGCCuccgcggCCCCGg -3' miRNA: 3'- -CUGu-GGCGCCGGGagUGGua-----GGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 61654 | 0.69 | 0.47865 |
Target: 5'- cGCACCaGCGGcCCCUCuacgcccgccGCCGcCCCCGc -3' miRNA: 3'- cUGUGG-CGCC-GGGAG----------UGGUaGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 58259 | 0.69 | 0.487695 |
Target: 5'- cGGCcuCCGCGGCCCcgGCCuccgcggCCCCGg -3' miRNA: 3'- -CUGu-GGCGCCGGGagUGGua-----GGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 50769 | 0.7 | 0.426236 |
Target: 5'- aGCGCCGUccGGCUUUC-CCAUCCCCc- -3' miRNA: 3'- cUGUGGCG--CCGGGAGuGGUAGGGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 83873 | 0.7 | 0.409534 |
Target: 5'- cAUGCCGCGuGCCCUCAUCAcaUCCUagCGUa -3' miRNA: 3'- cUGUGGCGC-CGGGAGUGGU--AGGG--GCA- -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 75198 | 0.7 | 0.426236 |
Target: 5'- aGCGCCGUGGCCaccuUCuCCAUCUCCa- -3' miRNA: 3'- cUGUGGCGCCGGg---AGuGGUAGGGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 3369 | 0.71 | 0.369619 |
Target: 5'- ---cCCGUGGCCCUgGCCggCCCCa- -3' miRNA: 3'- cuguGGCGCCGGGAgUGGuaGGGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 59581 | 0.71 | 0.368848 |
Target: 5'- cGACACCGCGGCCCgagCccagaagguugagACCuccugcCCCCGc -3' miRNA: 3'- -CUGUGGCGCCGGGa--G-------------UGGua----GGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 101846 | 0.71 | 0.401338 |
Target: 5'- uGGCGCCcuCGGCuCCUCgGCCAUUCCUGUu -3' miRNA: 3'- -CUGUGGc-GCCG-GGAG-UGGUAGGGGCA- -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 153241 | 0.71 | 0.377386 |
Target: 5'- --gGCCG-GGUCCUCgGCCAUCUCCGUc -3' miRNA: 3'- cugUGGCgCCGGGAG-UGGUAGGGGCA- -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 133329 | 0.71 | 0.369619 |
Target: 5'- uGCGCCaGCcccGCCCUCcCCAUCCCCa- -3' miRNA: 3'- cUGUGG-CGc--CGGGAGuGGUAGGGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 60795 | 0.71 | 0.401338 |
Target: 5'- uGCACCcuCGGCUC-CugCGUCCCCGg -3' miRNA: 3'- cUGUGGc-GCCGGGaGugGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 150816 | 0.72 | 0.354415 |
Target: 5'- cGGC-CCGCGGacgccgCCUCGCCAgcCCCCGg -3' miRNA: 3'- -CUGuGGCGCCg-----GGAGUGGUa-GGGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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