miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 5' -62.2 NC_007605.1 + 55855 1.06 0.001462
Target:  5'- cGACACCGCGGCCCUCACCAUCCCCGUc -3'
miRNA:   3'- -CUGUGGCGCCGGGAGUGGUAGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 50542 0.74 0.260587
Target:  5'- -cCACCGCGGCCCcgccgucggCugCAUCUCCGc -3'
miRNA:   3'- cuGUGGCGCCGGGa--------GugGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 63902 0.73 0.272645
Target:  5'- -uUACCGUGGCUCUaGCC-UCCCCGUg -3'
miRNA:   3'- cuGUGGCGCCGGGAgUGGuAGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 107789 0.73 0.298097
Target:  5'- cGAgGCCuaGGCCCUCgcgcacGCCAUCaCCCGg -3'
miRNA:   3'- -CUgUGGcgCCGGGAG------UGGUAG-GGGCa -5'
33306 5' -62.2 NC_007605.1 + 40252 0.73 0.298097
Target:  5'- gGGCAgCCGCGGCCCagCGCg--CCCCGUu -3'
miRNA:   3'- -CUGU-GGCGCCGGGa-GUGguaGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 164003 0.72 0.332448
Target:  5'- aGGCACCuGUGGCCCgcguaGCCGgUCCCCa- -3'
miRNA:   3'- -CUGUGG-CGCCGGGag---UGGU-AGGGGca -5'
33306 5' -62.2 NC_007605.1 + 150816 0.72 0.354415
Target:  5'- cGGC-CCGCGGacgccgCCUCGCCAgcCCCCGg -3'
miRNA:   3'- -CUGuGGCGCCg-----GGAGUGGUa-GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 59581 0.71 0.368848
Target:  5'- cGACACCGCGGCCCgagCccagaagguugagACCuccugcCCCCGc -3'
miRNA:   3'- -CUGUGGCGCCGGGa--G-------------UGGua----GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 133329 0.71 0.369619
Target:  5'- uGCGCCaGCcccGCCCUCcCCAUCCCCa- -3'
miRNA:   3'- cUGUGG-CGc--CGGGAGuGGUAGGGGca -5'
33306 5' -62.2 NC_007605.1 + 3369 0.71 0.369619
Target:  5'- ---cCCGUGGCCCUgGCCggCCCCa- -3'
miRNA:   3'- cuguGGCGCCGGGAgUGGuaGGGGca -5'
33306 5' -62.2 NC_007605.1 + 153241 0.71 0.377386
Target:  5'- --gGCCG-GGUCCUCgGCCAUCUCCGUc -3'
miRNA:   3'- cugUGGCgCCGGGAG-UGGUAGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 60795 0.71 0.401338
Target:  5'- uGCACCcuCGGCUC-CugCGUCCCCGg -3'
miRNA:   3'- cUGUGGc-GCCGGGaGugGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 101846 0.71 0.401338
Target:  5'- uGGCGCCcuCGGCuCCUCgGCCAUUCCUGUu -3'
miRNA:   3'- -CUGUGGc-GCCG-GGAG-UGGUAGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 83873 0.7 0.409534
Target:  5'- cAUGCCGCGuGCCCUCAUCAcaUCCUagCGUa -3'
miRNA:   3'- cUGUGGCGC-CGGGAGUGGU--AGGG--GCA- -5'
33306 5' -62.2 NC_007605.1 + 75198 0.7 0.426236
Target:  5'- aGCGCCGUGGCCaccuUCuCCAUCUCCa- -3'
miRNA:   3'- cUGUGGCGCCGGg---AGuGGUAGGGGca -5'
33306 5' -62.2 NC_007605.1 + 50769 0.7 0.426236
Target:  5'- aGCGCCGUccGGCUUUC-CCAUCCCCc- -3'
miRNA:   3'- cUGUGGCG--CCGGGAGuGGUAGGGGca -5'
33306 5' -62.2 NC_007605.1 + 61654 0.69 0.47865
Target:  5'- cGCACCaGCGGcCCCUCuacgcccgccGCCGcCCCCGc -3'
miRNA:   3'- cUGUGG-CGCC-GGGAG----------UGGUaGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 58259 0.69 0.487695
Target:  5'- cGGCcuCCGCGGCCCcgGCCuccgcggCCCCGg -3'
miRNA:   3'- -CUGu-GGCGCCGGGagUGGua-----GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 58304 0.69 0.487695
Target:  5'- cGGCcuCCGCGGCCCcgGCCuccgcggCCCCGg -3'
miRNA:   3'- -CUGu-GGCGCCGGGagUGGua-----GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 50578 0.69 0.49682
Target:  5'- gGGCGCUgGCGGCCggCGcCCGUCCUCGg -3'
miRNA:   3'- -CUGUGG-CGCCGGgaGU-GGUAGGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.