Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33306 | 5' | -62.2 | NC_007605.1 | + | 164003 | 0.72 | 0.332448 |
Target: 5'- aGGCACCuGUGGCCCgcguaGCCGgUCCCCa- -3' miRNA: 3'- -CUGUGG-CGCCGGGag---UGGU-AGGGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 107789 | 0.73 | 0.298097 |
Target: 5'- cGAgGCCuaGGCCCUCgcgcacGCCAUCaCCCGg -3' miRNA: 3'- -CUgUGGcgCCGGGAG------UGGUAG-GGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 40252 | 0.73 | 0.298097 |
Target: 5'- gGGCAgCCGCGGCCCagCGCg--CCCCGUu -3' miRNA: 3'- -CUGU-GGCGCCGGGa-GUGguaGGGGCA- -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 63902 | 0.73 | 0.272645 |
Target: 5'- -uUACCGUGGCUCUaGCC-UCCCCGUg -3' miRNA: 3'- cuGUGGCGCCGGGAgUGGuAGGGGCA- -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 50542 | 0.74 | 0.260587 |
Target: 5'- -cCACCGCGGCCCcgccgucggCugCAUCUCCGc -3' miRNA: 3'- cuGUGGCGCCGGGa--------GugGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 55855 | 1.06 | 0.001462 |
Target: 5'- cGACACCGCGGCCCUCACCAUCCCCGUc -3' miRNA: 3'- -CUGUGGCGCCGGGAGUGGUAGGGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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