miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 5' -62.2 NC_007605.1 + 3369 0.71 0.369619
Target:  5'- ---cCCGUGGCCCUgGCCggCCCCa- -3'
miRNA:   3'- cuguGGCGCCGGGAgUGGuaGGGGca -5'
33306 5' -62.2 NC_007605.1 + 13020 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 13594 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 16089 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 16663 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 19158 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 19732 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 22227 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 22801 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 25296 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 25870 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 28365 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 31434 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 32007 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 34503 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 35076 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 40252 0.73 0.298097
Target:  5'- gGGCAgCCGCGGCCCagCGCg--CCCCGUu -3'
miRNA:   3'- -CUGU-GGCGCCGGGa-GUGguaGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 40470 0.66 0.659704
Target:  5'- --gGCCGCGGUCCUC-----CCCCGUg -3'
miRNA:   3'- cugUGGCGCCGGGAGugguaGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 48901 0.66 0.666507
Target:  5'- -uCACCGUGGCUCcCGCCucuuggaugccaucAUCCCCu- -3'
miRNA:   3'- cuGUGGCGCCGGGaGUGG--------------UAGGGGca -5'
33306 5' -62.2 NC_007605.1 + 50427 0.67 0.581848
Target:  5'- uGGCG-CGCGGCCCgaggugCGCCuAUCCCaGUa -3'
miRNA:   3'- -CUGUgGCGCCGGGa-----GUGG-UAGGGgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.