miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 5' -62.2 NC_007605.1 + 50542 0.74 0.260587
Target:  5'- -cCACCGCGGCCCcgccgucggCugCAUCUCCGc -3'
miRNA:   3'- cuGUGGCGCCGGGa--------GugGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 50578 0.69 0.49682
Target:  5'- gGGCGCUgGCGGCCggCGcCCGUCCUCGg -3'
miRNA:   3'- -CUGUGG-CGCCGGgaGU-GGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 50769 0.7 0.426236
Target:  5'- aGCGCCGUccGGCUUUC-CCAUCCCCc- -3'
miRNA:   3'- cUGUGGCG--CCGGGAGuGGUAGGGGca -5'
33306 5' -62.2 NC_007605.1 + 50889 0.66 0.688758
Target:  5'- --aGCCGCggagauucGGCCCUcCGCCAcccgccUCCCCa- -3'
miRNA:   3'- cugUGGCG--------CCGGGA-GUGGU------AGGGGca -5'
33306 5' -62.2 NC_007605.1 + 53253 0.66 0.640221
Target:  5'- aGACACCcagGaGCCgCUCAacuaCAUCCCCGUc -3'
miRNA:   3'- -CUGUGGcg-C-CGG-GAGUg---GUAGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 53984 0.66 0.678139
Target:  5'- --uGCCGCcaucucgugGGCCUUCGCCAUCagggucuggcucuCCCGg -3'
miRNA:   3'- cugUGGCG---------CCGGGAGUGGUAG-------------GGGCa -5'
33306 5' -62.2 NC_007605.1 + 55855 1.06 0.001462
Target:  5'- cGACACCGCGGCCCUCACCAUCCCCGUc -3'
miRNA:   3'- -CUGUGGCGCCGGGAGUGGUAGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 58259 0.69 0.487695
Target:  5'- cGGCcuCCGCGGCCCcgGCCuccgcggCCCCGg -3'
miRNA:   3'- -CUGu-GGCGCCGGGagUGGua-----GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 58304 0.69 0.487695
Target:  5'- cGGCcuCCGCGGCCCcgGCCuccgcggCCCCGg -3'
miRNA:   3'- -CUGu-GGCGCCGGGagUGGua-----GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 58324 0.66 0.649969
Target:  5'- aGCACCGgGcGUCCcCGCCGccUCCCCa- -3'
miRNA:   3'- cUGUGGCgC-CGGGaGUGGU--AGGGGca -5'
33306 5' -62.2 NC_007605.1 + 58349 0.68 0.55302
Target:  5'- cGGCcuCUGCGGCCCcggccUCugCggCCCCGg -3'
miRNA:   3'- -CUGu-GGCGCCGGG-----AGugGuaGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 59581 0.71 0.368848
Target:  5'- cGACACCGCGGCCCgagCccagaagguugagACCuccugcCCCCGc -3'
miRNA:   3'- -CUGUGGCGCCGGGa--G-------------UGGua----GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 60405 0.66 0.692607
Target:  5'- gGGCAUCGCggaucacccccucugGGCCCaCACCAgcgagCCCCu- -3'
miRNA:   3'- -CUGUGGCG---------------CCGGGaGUGGUa----GGGGca -5'
33306 5' -62.2 NC_007605.1 + 60492 0.66 0.688758
Target:  5'- gGACGCCGCcgccaggugGGCCCUgGCCAcggCCGa -3'
miRNA:   3'- -CUGUGGCG---------CCGGGAgUGGUaggGGCa -5'
33306 5' -62.2 NC_007605.1 + 60795 0.71 0.401338
Target:  5'- uGCACCcuCGGCUC-CugCGUCCCCGg -3'
miRNA:   3'- cUGUGGc-GCCGGGaGugGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 61157 0.66 0.669419
Target:  5'- cGGCAgCGaccuGGCCCUC-CCuucCCCCGa -3'
miRNA:   3'- -CUGUgGCg---CCGGGAGuGGua-GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 61654 0.69 0.47865
Target:  5'- cGCACCaGCGGcCCCUCuacgcccgccGCCGcCCCCGc -3'
miRNA:   3'- cUGUGG-CGCC-GGGAG----------UGGUaGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 61743 0.67 0.630467
Target:  5'- -cCACCGCGaGCCCcacgaGCCGcuUCgCCCGUg -3'
miRNA:   3'- cuGUGGCGC-CGGGag---UGGU--AG-GGGCA- -5'
33306 5' -62.2 NC_007605.1 + 63902 0.73 0.272645
Target:  5'- -uUACCGUGGCUCUaGCC-UCCCCGUg -3'
miRNA:   3'- cuGUGGCGCCGGGAgUGGuAGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 67738 0.68 0.566427
Target:  5'- uGACGCUGUGGCCgaguggcagaaUCACCAgagcccagaggaggCCCCGg -3'
miRNA:   3'- -CUGUGGCGCCGGg----------AGUGGUa-------------GGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.