Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33306 | 5' | -62.2 | NC_007605.1 | + | 75198 | 0.7 | 0.426236 |
Target: 5'- aGCGCCGUGGCCaccuUCuCCAUCUCCa- -3' miRNA: 3'- cUGUGGCGCCGGg---AGuGGUAGGGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 81485 | 0.66 | 0.659704 |
Target: 5'- uAUugUcCGGCCCUgggaGCCAUCCCUGa -3' miRNA: 3'- cUGugGcGCCGGGAg---UGGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 83873 | 0.7 | 0.409534 |
Target: 5'- cAUGCCGCGuGCCCUCAUCAcaUCCUagCGUa -3' miRNA: 3'- cUGUGGCGC-CGGGAGUGGU--AGGG--GCA- -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 87446 | 0.66 | 0.688758 |
Target: 5'- aGugACCGUGgaGCCCgccCACCcgaCCCCGg -3' miRNA: 3'- -CugUGGCGC--CGGGa--GUGGua-GGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 89801 | 0.67 | 0.60124 |
Target: 5'- uGGCAgCCGCGGCCaUCACCuggguaCCCa- -3' miRNA: 3'- -CUGU-GGCGCCGGgAGUGGuag---GGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 91749 | 0.67 | 0.581848 |
Target: 5'- cGGgGCCuCGGCCCUgGCCucUUCCCGc -3' miRNA: 3'- -CUgUGGcGCCGGGAgUGGu-AGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 101846 | 0.71 | 0.401338 |
Target: 5'- uGGCGCCcuCGGCuCCUCgGCCAUUCCUGUu -3' miRNA: 3'- -CUGUGGc-GCCG-GGAG-UGGUAGGGGCA- -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 104928 | 0.68 | 0.543502 |
Target: 5'- aGAC-CCGaggcagacaaGGCCC-CGCCAUCCCaCGa -3' miRNA: 3'- -CUGuGGCg---------CCGGGaGUGGUAGGG-GCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 105441 | 0.67 | 0.60124 |
Target: 5'- gGGCACuCGgGGgCCUCuacaccGCCGUCaCCCGg -3' miRNA: 3'- -CUGUG-GCgCCgGGAG------UGGUAG-GGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 107789 | 0.73 | 0.298097 |
Target: 5'- cGAgGCCuaGGCCCUCgcgcacGCCAUCaCCCGg -3' miRNA: 3'- -CUgUGGcgCCGGGAG------UGGUAG-GGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 110829 | 0.67 | 0.61097 |
Target: 5'- cGGCACUGCGGCCuCUU-CCAUucggacauuagCCCCa- -3' miRNA: 3'- -CUGUGGCGCCGG-GAGuGGUA-----------GGGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 117467 | 0.67 | 0.630467 |
Target: 5'- uGCGUCGUGGCCCUCGUC-UCCUCGa -3' miRNA: 3'- cUGUGGCGCCGGGAGUGGuAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 122166 | 0.66 | 0.649969 |
Target: 5'- uGCAUgGUGGCagccaCUCGCgGgUCCCCGUa -3' miRNA: 3'- cUGUGgCGCCGg----GAGUGgU-AGGGGCA- -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 133329 | 0.71 | 0.369619 |
Target: 5'- uGCGCCaGCcccGCCCUCcCCAUCCCCa- -3' miRNA: 3'- cUGUGG-CGc--CGGGAGuGGUAGGGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 134665 | 0.67 | 0.620715 |
Target: 5'- uGACGCUG-GGCuaCCUgGCC-UCCCCGg -3' miRNA: 3'- -CUGUGGCgCCG--GGAgUGGuAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 136331 | 0.67 | 0.61097 |
Target: 5'- -cCGCCGCGGgccaggaCCUCAUCAgcgucCCCCGc -3' miRNA: 3'- cuGUGGCGCCg------GGAGUGGUa----GGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 138587 | 0.67 | 0.61097 |
Target: 5'- -cCGCCGUGuCUggCUCACCAUCCCCc- -3' miRNA: 3'- cuGUGGCGCcGG--GAGUGGUAGGGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 138864 | 0.66 | 0.640221 |
Target: 5'- aACuCCGCGGUCCUUAUCAguuuucUgCCCGUu -3' miRNA: 3'- cUGuGGCGCCGGGAGUGGU------AgGGGCA- -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 147919 | 0.66 | 0.640221 |
Target: 5'- uGAC-CCGUGGgCCUUACC-UUCCUGg -3' miRNA: 3'- -CUGuGGCGCCgGGAGUGGuAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 149466 | 0.66 | 0.669419 |
Target: 5'- -uUACCGCGGCguauggcguuuaCCggacaCACCuUCCCCGg -3' miRNA: 3'- cuGUGGCGCCG------------GGa----GUGGuAGGGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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