Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33306 | 5' | -62.2 | NC_007605.1 | + | 25296 | 0.68 | 0.550159 |
Target: 5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3' miRNA: 3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 22801 | 0.68 | 0.524634 |
Target: 5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3' miRNA: 3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 25870 | 0.68 | 0.524634 |
Target: 5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3' miRNA: 3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 32007 | 0.68 | 0.524634 |
Target: 5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3' miRNA: 3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 35076 | 0.68 | 0.524634 |
Target: 5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3' miRNA: 3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 13020 | 0.68 | 0.550159 |
Target: 5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3' miRNA: 3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 16089 | 0.68 | 0.550159 |
Target: 5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3' miRNA: 3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 19158 | 0.68 | 0.550159 |
Target: 5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3' miRNA: 3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 22227 | 0.68 | 0.550159 |
Target: 5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3' miRNA: 3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 19732 | 0.68 | 0.524634 |
Target: 5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3' miRNA: 3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 16663 | 0.68 | 0.524634 |
Target: 5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3' miRNA: 3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 13594 | 0.68 | 0.524634 |
Target: 5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3' miRNA: 3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 40252 | 0.73 | 0.298097 |
Target: 5'- gGGCAgCCGCGGCCCagCGCg--CCCCGUu -3' miRNA: 3'- -CUGU-GGCGCCGGGa-GUGguaGGGGCA- -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 107789 | 0.73 | 0.298097 |
Target: 5'- cGAgGCCuaGGCCCUCgcgcacGCCAUCaCCCGg -3' miRNA: 3'- -CUgUGGcgCCGGGAG------UGGUAG-GGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 164003 | 0.72 | 0.332448 |
Target: 5'- aGGCACCuGUGGCCCgcguaGCCGgUCCCCa- -3' miRNA: 3'- -CUGUGG-CGCCGGGag---UGGU-AGGGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 150816 | 0.72 | 0.354415 |
Target: 5'- cGGC-CCGCGGacgccgCCUCGCCAgcCCCCGg -3' miRNA: 3'- -CUGuGGCGCCg-----GGAGUGGUa-GGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 133329 | 0.71 | 0.369619 |
Target: 5'- uGCGCCaGCcccGCCCUCcCCAUCCCCa- -3' miRNA: 3'- cUGUGG-CGc--CGGGAGuGGUAGGGGca -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 153241 | 0.71 | 0.377386 |
Target: 5'- --gGCCG-GGUCCUCgGCCAUCUCCGUc -3' miRNA: 3'- cugUGGCgCCGGGAG-UGGUAGGGGCA- -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 60795 | 0.71 | 0.401338 |
Target: 5'- uGCACCcuCGGCUC-CugCGUCCCCGg -3' miRNA: 3'- cUGUGGc-GCCGGGaGugGUAGGGGCa -5' |
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33306 | 5' | -62.2 | NC_007605.1 | + | 101846 | 0.71 | 0.401338 |
Target: 5'- uGGCGCCcuCGGCuCCUCgGCCAUUCCUGUu -3' miRNA: 3'- -CUGUGGc-GCCG-GGAG-UGGUAGGGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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