miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 5' -62.2 NC_007605.1 + 55855 1.06 0.001462
Target:  5'- cGACACCGCGGCCCUCACCAUCCCCGUc -3'
miRNA:   3'- -CUGUGGCGCCGGGAGUGGUAGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 138587 0.67 0.61097
Target:  5'- -cCGCCGUGuCUggCUCACCAUCCCCc- -3'
miRNA:   3'- cuGUGGCGCcGG--GAGUGGUAGGGGca -5'
33306 5' -62.2 NC_007605.1 + 61743 0.67 0.630467
Target:  5'- -cCACCGCGaGCCCcacgaGCCGcuUCgCCCGUg -3'
miRNA:   3'- cuGUGGCGC-CGGGag---UGGU--AG-GGGCA- -5'
33306 5' -62.2 NC_007605.1 + 60405 0.66 0.692607
Target:  5'- gGGCAUCGCggaucacccccucugGGCCCaCACCAgcgagCCCCu- -3'
miRNA:   3'- -CUGUGGCG---------------CCGGGaGUGGUa----GGGGca -5'
33306 5' -62.2 NC_007605.1 + 83873 0.7 0.409534
Target:  5'- cAUGCCGCGuGCCCUCAUCAcaUCCUagCGUa -3'
miRNA:   3'- cUGUGGCGC-CGGGAGUGGU--AGGG--GCA- -5'
33306 5' -62.2 NC_007605.1 + 75198 0.7 0.426236
Target:  5'- aGCGCCGUGGCCaccuUCuCCAUCUCCa- -3'
miRNA:   3'- cUGUGGCGCCGGg---AGuGGUAGGGGca -5'
33306 5' -62.2 NC_007605.1 + 61654 0.69 0.47865
Target:  5'- cGCACCaGCGGcCCCUCuacgcccgccGCCGcCCCCGc -3'
miRNA:   3'- cUGUGG-CGCC-GGGAG----------UGGUaGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 58304 0.69 0.487695
Target:  5'- cGGCcuCCGCGGCCCcgGCCuccgcggCCCCGg -3'
miRNA:   3'- -CUGu-GGCGCCGGGagUGGua-----GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 154121 0.68 0.534039
Target:  5'- aAC-CUGCaGGCCCUgGCCcccUCCCCGg -3'
miRNA:   3'- cUGuGGCG-CCGGGAgUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 89801 0.67 0.60124
Target:  5'- uGGCAgCCGCGGCCaUCACCuggguaCCCa- -3'
miRNA:   3'- -CUGU-GGCGCCGGgAGUGGuag---GGGca -5'
33306 5' -62.2 NC_007605.1 + 58349 0.68 0.55302
Target:  5'- cGGCcuCUGCGGCCCcggccUCugCggCCCCGg -3'
miRNA:   3'- -CUGu-GGCGCCGGG-----AGugGuaGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 50578 0.69 0.49682
Target:  5'- gGGCGCUgGCGGCCggCGcCCGUCCUCGg -3'
miRNA:   3'- -CUGUGG-CGCCGGgaGU-GGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 50542 0.74 0.260587
Target:  5'- -cCACCGCGGCCCcgccgucggCugCAUCUCCGc -3'
miRNA:   3'- cuGUGGCGCCGGGa--------GugGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 50427 0.67 0.581848
Target:  5'- uGGCG-CGCGGCCCgaggugCGCCuAUCCCaGUa -3'
miRNA:   3'- -CUGUgGCGCCGGGa-----GUGG-UAGGGgCA- -5'
33306 5' -62.2 NC_007605.1 + 59581 0.71 0.368848
Target:  5'- cGACACCGCGGCCCgagCccagaagguugagACCuccugcCCCCGc -3'
miRNA:   3'- -CUGUGGCGCCGGGa--G-------------UGGua----GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 58259 0.69 0.487695
Target:  5'- cGGCcuCCGCGGCCCcgGCCuccgcggCCCCGg -3'
miRNA:   3'- -CUGu-GGCGCCGGGagUGGua-----GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 105441 0.67 0.60124
Target:  5'- gGGCACuCGgGGgCCUCuacaccGCCGUCaCCCGg -3'
miRNA:   3'- -CUGUG-GCgCCgGGAG------UGGUAG-GGGCa -5'
33306 5' -62.2 NC_007605.1 + 110829 0.67 0.61097
Target:  5'- cGGCACUGCGGCCuCUU-CCAUucggacauuagCCCCa- -3'
miRNA:   3'- -CUGUGGCGCCGG-GAGuGGUA-----------GGGGca -5'
33306 5' -62.2 NC_007605.1 + 3369 0.71 0.369619
Target:  5'- ---cCCGUGGCCCUgGCCggCCCCa- -3'
miRNA:   3'- cuguGGCGCCGGGAgUGGuaGGGGca -5'
33306 5' -62.2 NC_007605.1 + 50769 0.7 0.426236
Target:  5'- aGCGCCGUccGGCUUUC-CCAUCCCCc- -3'
miRNA:   3'- cUGUGGCG--CCGGGAGuGGUAGGGGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.