miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33306 5' -62.2 NC_007605.1 + 50889 0.66 0.688758
Target:  5'- --aGCCGCggagauucGGCCCUcCGCCAcccgccUCCCCa- -3'
miRNA:   3'- cugUGGCG--------CCGGGA-GUGGU------AGGGGca -5'
33306 5' -62.2 NC_007605.1 + 61743 0.67 0.630467
Target:  5'- -cCACCGCGaGCCCcacgaGCCGcuUCgCCCGUg -3'
miRNA:   3'- cuGUGGCGC-CGGGag---UGGU--AG-GGGCA- -5'
33306 5' -62.2 NC_007605.1 + 50769 0.7 0.426236
Target:  5'- aGCGCCGUccGGCUUUC-CCAUCCCCc- -3'
miRNA:   3'- cUGUGGCG--CCGGGAGuGGUAGGGGca -5'
33306 5' -62.2 NC_007605.1 + 61157 0.66 0.669419
Target:  5'- cGGCAgCGaccuGGCCCUC-CCuucCCCCGa -3'
miRNA:   3'- -CUGUgGCg---CCGGGAGuGGua-GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 60405 0.66 0.692607
Target:  5'- gGGCAUCGCggaucacccccucugGGCCCaCACCAgcgagCCCCu- -3'
miRNA:   3'- -CUGUGGCG---------------CCGGGaGUGGUa----GGGGca -5'
33306 5' -62.2 NC_007605.1 + 60492 0.66 0.688758
Target:  5'- gGACGCCGCcgccaggugGGCCCUgGCCAcggCCGa -3'
miRNA:   3'- -CUGUGGCG---------CCGGGAgUGGUaggGGCa -5'
33306 5' -62.2 NC_007605.1 + 75198 0.7 0.426236
Target:  5'- aGCGCCGUGGCCaccuUCuCCAUCUCCa- -3'
miRNA:   3'- cUGUGGCGCCGGg---AGuGGUAGGGGca -5'
33306 5' -62.2 NC_007605.1 + 83873 0.7 0.409534
Target:  5'- cAUGCCGCGuGCCCUCAUCAcaUCCUagCGUa -3'
miRNA:   3'- cUGUGGCGC-CGGGAGUGGU--AGGG--GCA- -5'
33306 5' -62.2 NC_007605.1 + 53253 0.66 0.640221
Target:  5'- aGACACCcagGaGCCgCUCAacuaCAUCCCCGUc -3'
miRNA:   3'- -CUGUGGcg-C-CGG-GAGUg---GUAGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 153241 0.71 0.377386
Target:  5'- --gGCCG-GGUCCUCgGCCAUCUCCGUc -3'
miRNA:   3'- cugUGGCgCCGGGAG-UGGUAGGGGCA- -5'
33306 5' -62.2 NC_007605.1 + 147919 0.66 0.640221
Target:  5'- uGAC-CCGUGGgCCUUACC-UUCCUGg -3'
miRNA:   3'- -CUGuGGCGCCgGGAGUGGuAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 32007 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 25870 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 22801 0.68 0.524634
Target:  5'- -cCACgGUggacaGGCCCUCuguccacccggGCCAUCCCCGc -3'
miRNA:   3'- cuGUGgCG-----CCGGGAG-----------UGGUAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 34503 0.68 0.550159
Target:  5'- cGGCAgCCcggGCGGCCCcagaggccgguuccUCGCCccuUCCCCGg -3'
miRNA:   3'- -CUGU-GG---CGCCGGG--------------AGUGGu--AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 67738 0.68 0.566427
Target:  5'- uGACGCUGUGGCCgaguggcagaaUCACCAgagcccagaggaggCCCCGg -3'
miRNA:   3'- -CUGUGGCGCCGGg----------AGUGGUa-------------GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 91749 0.67 0.581848
Target:  5'- cGGgGCCuCGGCCCUgGCCucUUCCCGc -3'
miRNA:   3'- -CUgUGGcGCCGGGAgUGGu-AGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 136331 0.67 0.61097
Target:  5'- -cCGCCGCGGgccaggaCCUCAUCAgcgucCCCCGc -3'
miRNA:   3'- cuGUGGCGCCg------GGAGUGGUa----GGGGCa -5'
33306 5' -62.2 NC_007605.1 + 134665 0.67 0.620715
Target:  5'- uGACGCUG-GGCuaCCUgGCC-UCCCCGg -3'
miRNA:   3'- -CUGUGGCgCCG--GGAgUGGuAGGGGCa -5'
33306 5' -62.2 NC_007605.1 + 117467 0.67 0.630467
Target:  5'- uGCGUCGUGGCCCUCGUC-UCCUCGa -3'
miRNA:   3'- cUGUGGCGCCGGGAGUGGuAGGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.