Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33307 | 3' | -53.8 | NC_007605.1 | + | 142627 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 141811 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 141913 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 142015 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 142117 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 142219 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 142321 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 142423 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 142525 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 141608 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 141506 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 141404 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 120001 | 0.72 | 0.779609 |
Target: 5'- cCAGCaaGUGGCCGUCagGGUCUcuuGAGAGUa -3' miRNA: 3'- -GUUG--CACCGGCAGg-CCAGG---UUCUUAc -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 112552 | 0.7 | 0.849062 |
Target: 5'- gCAGCGcGGCCGUCUGa-CCGAGAAc- -3' miRNA: 3'- -GUUGCaCCGGCAGGCcaGGUUCUUac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 140792 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 140894 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 140996 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 141098 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 141200 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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33307 | 3' | -53.8 | NC_007605.1 | + | 141302 | 0.68 | 0.92889 |
Target: 5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3' miRNA: 3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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