miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33307 3' -53.8 NC_007605.1 + 141302 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 141404 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 141506 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 141608 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 141811 0.68 0.92889
Target:  5'- gGGgGUGGCCGgcugcagCCgGGUCCGGGGu-- -3'
miRNA:   3'- gUUgCACCGGCa------GG-CCAGGUUCUuac -5'
33307 3' -53.8 NC_007605.1 + 163151 0.68 0.923521
Target:  5'- aGACGUGaCCGgaaccaaCGGUCCGGGAAa- -3'
miRNA:   3'- gUUGCACcGGCag-----GCCAGGUUCUUac -5'
33307 3' -53.8 NC_007605.1 + 112552 0.7 0.849062
Target:  5'- gCAGCGcGGCCGUCUGa-CCGAGAAc- -3'
miRNA:   3'- -GUUGCaCCGGCAGGCcaGGUUCUUac -5'
33307 3' -53.8 NC_007605.1 + 161066 0.71 0.80689
Target:  5'- uCAGCGUGGCCGagCCGGUCa------- -3'
miRNA:   3'- -GUUGCACCGGCa-GGCCAGguucuuac -5'
33307 3' -53.8 NC_007605.1 + 120001 0.72 0.779609
Target:  5'- cCAGCaaGUGGCCGUCagGGUCUcuuGAGAGUa -3'
miRNA:   3'- -GUUG--CACCGGCAGg-CCAGG---UUCUUAc -5'
33307 3' -53.8 NC_007605.1 + 63588 0.74 0.64049
Target:  5'- -cGCGUGGCUcUCCGGcggcgCCGGGggUGg -3'
miRNA:   3'- guUGCACCGGcAGGCCa----GGUUCuuAC- -5'
33307 3' -53.8 NC_007605.1 + 100222 0.74 0.634327
Target:  5'- gGAUGUGGCCGUCCGcuauggcggaagggaGUUCAGGGAc- -3'
miRNA:   3'- gUUGCACCGGCAGGC---------------CAGGUUCUUac -5'
33307 3' -53.8 NC_007605.1 + 56392 1.08 0.00651
Target:  5'- aCAACGUGGCCGUCCGGUCCAAGAAUGc -3'
miRNA:   3'- -GUUGCACCGGCAGGCCAGGUUCUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.