Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33307 | 5' | -57.7 | NC_007605.1 | + | 56358 | 1.05 | 0.004199 |
Target: 5'- gCACGUGCGCAGGUGUACGGCGGACAUc -3' miRNA: 3'- -GUGCACGCGUCCACAUGCCGCCUGUA- -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 169604 | 0.72 | 0.52226 |
Target: 5'- uGCGgGCGguGGaugGCGGCGGACGUu -3' miRNA: 3'- gUGCaCGCguCCacaUGCCGCCUGUA- -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 171201 | 0.72 | 0.52226 |
Target: 5'- uGCGgGCGguGGaugGCGGCGGACGUu -3' miRNA: 3'- gUGCaCGCguCCacaUGCCGCCUGUA- -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 170663 | 0.72 | 0.52226 |
Target: 5'- uGCGgGCGguGGaugGCGGCGGACGUu -3' miRNA: 3'- gUGCaCGCguCCacaUGCCGCCUGUA- -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 170141 | 0.72 | 0.52226 |
Target: 5'- uGCGgGCGguGGaugGCGGCGGACGUu -3' miRNA: 3'- gUGCaCGCguCCacaUGCCGCCUGUA- -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 61441 | 0.71 | 0.581528 |
Target: 5'- uCGCG-GCGgGGGcg-GCGGCGGGCGUa -3' miRNA: 3'- -GUGCaCGCgUCCacaUGCCGCCUGUA- -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 61973 | 0.7 | 0.621824 |
Target: 5'- -uCGUGUGCAGGag-GCGGCGGGgAg -3' miRNA: 3'- guGCACGCGUCCacaUGCCGCCUgUa -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 110283 | 0.69 | 0.692327 |
Target: 5'- -cCGUGCGUGGaUGUcACGGCGGAgCAUa -3' miRNA: 3'- guGCACGCGUCcACA-UGCCGCCU-GUA- -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 61617 | 0.68 | 0.740416 |
Target: 5'- cCGCGacgGCuGUGGGUGUgggggcgGCGGCGGACc- -3' miRNA: 3'- -GUGCa--CG-CGUCCACA-------UGCCGCCUGua -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 122538 | 0.67 | 0.805891 |
Target: 5'- -cCGUGCGU--GUGU-CGGUGGACAa -3' miRNA: 3'- guGCACGCGucCACAuGCCGCCUGUa -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 132077 | 0.67 | 0.81456 |
Target: 5'- uUugGUGUGCGGGUGcugGUGGCuGGGCu- -3' miRNA: 3'- -GugCACGCGUCCACa--UGCCG-CCUGua -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 144817 | 0.66 | 0.831405 |
Target: 5'- aCAgGUGUGCAGGUGUGCaugacaaaucuuGGgGGucuCAg -3' miRNA: 3'- -GUgCACGCGUCCACAUG------------CCgCCu--GUa -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 162244 | 0.66 | 0.839566 |
Target: 5'- aCGCGgcccugcaggGC-CGGGUGUACGGCcGGCGg -3' miRNA: 3'- -GUGCa---------CGcGUCCACAUGCCGcCUGUa -5' |
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33307 | 5' | -57.7 | NC_007605.1 | + | 2279 | 0.66 | 0.870302 |
Target: 5'- gUACGauuccgGC-CAGGUG-GCGGCGGGCu- -3' miRNA: 3'- -GUGCa-----CGcGUCCACaUGCCGCCUGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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