miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33308 3' -62.9 NC_007605.1 + 38895 0.65 0.663446
Target:  5'- gCCgggGUUCCUGGCgcuccgggggcagcGGGcGGCCGCCgGu -3'
miRNA:   3'- aGGa--UAGGGACCG--------------CCU-CCGGCGGgCu -5'
33308 3' -62.9 NC_007605.1 + 26055 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 22986 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 35261 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 13779 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 16848 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 19917 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 32192 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 151282 0.66 0.660547
Target:  5'- gCCg--CCCagGGgGGcaaauugcgugucugGGGCCGCCUGAg -3'
miRNA:   3'- aGGauaGGGa-CCgCC---------------UCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 62142 0.66 0.646999
Target:  5'- cCCg--UCCUGGCcuuuGAcGCCGCCCGGc -3'
miRNA:   3'- aGGauaGGGACCGc---CUcCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 159996 0.66 0.641185
Target:  5'- cUCCggccgCCCcgGGCccgGGAccgcgcccuccucugGGCCGCCCGGc -3'
miRNA:   3'- -AGGaua--GGGa-CCG---CCU---------------CCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 38395 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 38520 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39269 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39394 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 38770 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39644 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 38270 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39019 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 38645 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.