miRNA display CGI


Results 41 - 60 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33308 3' -62.9 NC_007605.1 + 154692 0.67 0.550695
Target:  5'- cUCCUGcCuCCUGGC---GGCCGCCCa- -3'
miRNA:   3'- -AGGAUaG-GGACCGccuCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 50738 0.67 0.550695
Target:  5'- cCCg--CCCUGGggucCGGcuuGGCCGCCCc- -3'
miRNA:   3'- aGGauaGGGACC----GCCu--CCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 24393 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 33600 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 161961 0.67 0.550695
Target:  5'- cCCUGUCCCcaGCGG-GGCCaGCgCGGa -3'
miRNA:   3'- aGGAUAGGGacCGCCuCCGG-CGgGCU- -5'
33308 3' -62.9 NC_007605.1 + 106140 0.67 0.569734
Target:  5'- aCCgg-CCgUGGUGG-GGaCGCCCGAc -3'
miRNA:   3'- aGGauaGGgACCGCCuCCgGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 140620 0.67 0.550695
Target:  5'- aCCcagCCCUGGagcuCGGGGGCgGCCgGGu -3'
miRNA:   3'- aGGauaGGGACC----GCCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 59957 0.67 0.569734
Target:  5'- cUCCc--CCCU-GCGGAaGCCGCCUGGg -3'
miRNA:   3'- -AGGauaGGGAcCGCCUcCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 144622 0.67 0.588931
Target:  5'- cCCUAcaggcUCCCaaGGCGGGGGUUggGCCCa- -3'
miRNA:   3'- aGGAU-----AGGGa-CCGCCUCCGG--CGGGcu -5'
33308 3' -62.9 NC_007605.1 + 159111 0.67 0.579316
Target:  5'- aUUCUGUgCCgGGCGcugcgcGAGGCCGUCCu- -3'
miRNA:   3'- -AGGAUAgGGaCCGC------CUCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 30531 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 59442 0.67 0.560192
Target:  5'- cCUUAUCUCUcGGCGGcuGCCGCCg-- -3'
miRNA:   3'- aGGAUAGGGA-CCGCCucCGGCGGgcu -5'
33308 3' -62.9 NC_007605.1 + 15186 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 161135 0.68 0.522522
Target:  5'- ---------cGGCGGAGGCCGCUCGGg -3'
miRNA:   3'- aggauagggaCCGCCUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 141841 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 141026 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 141739 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 143064 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 61511 0.68 0.494922
Target:  5'- cUCCg--CCCgcaGGU--AGGCCGCCCGGg -3'
miRNA:   3'- -AGGauaGGGa--CCGccUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 122492 0.68 0.541247
Target:  5'- gUCCUcGUCCCUGGUaaaauGGuGGCUgaaggcugGCCCGu -3'
miRNA:   3'- -AGGA-UAGGGACCG-----CCuCCGG--------CGGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.